# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2evrA	246	9.34e-05	b.34.11.3,d.3.1.16	132440,132441
2hbwA	235	0.000102		
3gt2A	142	0.000121		
3h41A	311	0.000617		
3m1uA	434	0.2451		
2if6A	186	1.214	d.3.1.21	147651
3ebqA	170	2.730		
3ddyA	186	3.427		
2a19A	175	5.611		
1am2	199	6.534		
2gc1A	188	11.49	b.82.1.7	134928
1q46A	175	13.81	a.60.14.1,b.40.4.5	111594,111595
1am2A	199	16.68	b.86.1.2	28381
3l42A	130	18.63		
1go3E	187	18.76	b.40.4.5,d.230.1.1	83054,83055
1yozA	116	19.64	a.253.1.1	123796
2xdvA	442	20.48		
3g98A	111	22.00		
2shpA	525	24.51	c.45.1.2,d.93.1.1,d.93.1.1	32683,40533,40534
1pmyA	123	25.25	b.6.1.1	22888
1l7lA	121	25.63	b.18.1.16	77790
1i8dA	213	25.75	b.43.4.3,b.43.4.3	61953,61954
2fe3A	145	27.60		
2nn6H	308	28.68	b.40.4.5,b.84.4.2,d.51.1.1	148310,148311,148312
2hd9A	145	29.00	b.122.1.8	147268
3a2yA	197	29.36		
1h3zA	109	29.51	b.34.9.2	83471
1gm6A	175	31.35	b.60.1.1	70272
1pazA	123	32.73	b.6.1.1	22878
3a2zA	197	35.52		
2q4zA	312	36.14		
3l2hA	162	38.66		
1q8kA	308	38.94	d.58.51.1,a.60.14.1,b.40.4.5	104557,111596,111597
1kl9A	182	39.98	a.60.14.1,b.40.4.5	111574,111575
2f4pA	147	41.58	b.82.1.9	132933
1kzlA	208	42.25	b.43.4.3,b.43.4.3	77635,77636
1vrbA	342	45.87	b.82.2.11	120450
3htyA	94	47.72		
2w87A	139	48.90		
2hdvA	111	51.81		
2khaA	130	51.93		
2glwA	92	52.44		
1wi5A	119	52.56	b.40.4.5	114661
3a35A	190	52.88		
3lljA	126	54.58		
2p3uA	52	54.73	g.3.11.1	149188
1mi8A	158	56.27	b.86.1.2	91279
1o4sA	389	56.89	c.67.1.1	86620
2pr3B	51	58.72	g.3.11.1	149798
2z0tA	109	61.89		
1z6eB	52	61.91	g.3.11.1	124519
1n27A	96	62.43	b.34.9.2	91549
2vt8A	153	64.28		
3libA	290	64.29		
1hjdA	101	64.69	b.34.2.1	65846
2hj1A	97	64.74	d.15.3.4	147292
2joxA	106	64.99		
2w57A	150	65.63		
2napA	723	67.33	b.52.2.2,c.81.1.1	26926,35334
1i9gA	280	70.33	c.66.1.13	62090
1xgsA	295	72.83	a.4.5.25,d.127.1.1	16216,41153
1kb9D	246	73.03	a.3.1.3,f.23.11.1	77317,77318
2exdA	80	75.98	b.40.12.1	132524
1hxrA	115	77.28	b.88.1.1	28392
2j85A	122	79.41	d.321.1.1	138133
3d8cA	349	79.50		
3kkgA	146	79.71		
2d5wA	603	80.66		
2cr4A	126	81.55		
2w3jA	145	81.94		
1ootA	60	82.32	b.34.2.1	93386
1otjA	283	82.50	b.82.2.5	93517
2ozjA	114	83.01		
2rqeA	106	83.36		
1tmxA	293	85.43		
3if6A	266	86.73		
2eo4A	149	87.75		
1wmmA	145	88.94	b.122.1.8	121049
1bccD	241	89.36	a.3.1.3,f.23.11.1	15959,43698