# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3gt2A	142	0.000821		
2hbwA	235	0.001403		
2evrA	246	0.001463	b.34.11.3,d.3.1.16	132440,132441
3h41A	311	0.004110		
3m1uA	434	0.1144		
3ebqA	170	2.677		
2if6A	186	5.445	d.3.1.21	147651
2a19A	175	12.43		
1q46A	175	13.22	a.60.14.1,b.40.4.5	111594,111595
3f1tA	148	17.91		
3lyiA	126	20.22		
1fbnA	230	24.53	c.66.1.3	34181
3l42A	130	25.00		
1wy0A	342	25.40		
1am2	199	25.75		
1l7lA	121	28.05	b.18.1.16	77790
2hd9A	145	31.13	b.122.1.8	147268
2q4zA	312	32.97		
3a2yA	197	34.71		
1mi8A	158	42.07	b.86.1.2	91279
1am2A	199	42.71	b.86.1.2	28381
1hxrA	115	44.29	b.88.1.1	28392
1kl9A	182	47.57	a.60.14.1,b.40.4.5	111574,111575
1o98A	511	48.34	c.105.1.1,c.76.1.3	86684,86685
1fiqB	350	48.88	d.87.2.1,d.145.1.3	40229,41760
2xdvA	442	50.14		
3ddyA	186	50.44		
2g64A	140	52.41	d.96.1.2	134694
3a2zA	197	55.53		
1cx4A	305	60.32	b.82.3.2,b.82.3.2	59099,59100
1v8qA	85	63.35	b.84.4.1	108428
1yozA	116	64.66	a.253.1.1	123796
3mx6A	262	65.22		
1go3E	187	66.44	b.40.4.5,d.230.1.1	83054,83055
1i8dA	213	70.03	b.43.4.3,b.43.4.3	61953,61954
1xgsA	295	77.54	a.4.5.25,d.127.1.1	16216,41153
2i09A	403	78.91	c.76.1.5,d.327.1.1	136946,136947
2ww4A	283	79.43		
2vzpA	127	80.07		
1q8kA	308	83.38	d.58.51.1,a.60.14.1,b.40.4.5	104557,111596,111597