# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3gt2A	142	0.000734		
2hbwA	235	0.001329		
2evrA	246	0.001366	b.34.11.3,d.3.1.16	132440,132441
3h41A	311	0.004489		
3m1uA	434	0.07102		
3ebqA	170	2.263		
2if6A	186	3.906	d.3.1.21	147651
1q46A	175	10.87	a.60.14.1,b.40.4.5	111594,111595
2a19A	175	12.24		
3f1tA	148	16.81		
1am2	199	17.70		
1wy0A	342	17.90		
3l42A	130	19.41		
2hd9A	145	20.62	b.122.1.8	147268
3lyiA	126	24.02		
1am2A	199	27.79	b.86.1.2	28381
1l7lA	121	29.07	b.18.1.16	77790
1mi8A	158	31.26	b.86.1.2	91279
3a2yA	197	32.65		
3ddyA	186	33.07		
2xdvA	442	37.26		
2g64A	140	38.92	d.96.1.2	134694
1kl9A	182	46.18	a.60.14.1,b.40.4.5	111574,111575
1fbnA	230	47.77	c.66.1.3	34181
3a2zA	197	48.40		
2q4zA	312	49.23		
1hxrA	115	49.73	b.88.1.1	28392
1go3E	187	51.60	b.40.4.5,d.230.1.1	83054,83055
1v8qA	85	53.27	b.84.4.1	108428
1i8dA	213	53.78	b.43.4.3,b.43.4.3	61953,61954
1xgsA	295	55.93	a.4.5.25,d.127.1.1	16216,41153
1o98A	511	67.56	c.105.1.1,c.76.1.3	86684,86685
2ww4A	283	71.08		
1fiqB	350	71.37	d.87.2.1,d.145.1.3	40229,41760
1wmmA	145	78.33	b.122.1.8	121049
1yozA	116	78.51	a.253.1.1	123796
3mx6A	262	85.64		
1kzlA	208	86.06	b.43.4.3,b.43.4.3	77635,77636
3bijA	285	87.14