# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2evrA	246	3.41e-05	b.34.11.3,d.3.1.16	132440,132441
2hbwA	235	3.81e-05		
3gt2A	142	4.09e-05		
3h41A	311	0.000273		
3m1uA	434	0.02835		
2if6A	186	1.267	d.3.1.21	147651
3ebqA	170	2.386		
1fbnA	230	3.940	c.66.1.3	34181
1yozA	116	4.694	a.253.1.1	123796
2gc1A	188	9.061	b.82.1.7	134928
1g8sA	230	9.393	c.66.1.3	90507
1am2A	199	9.785	b.86.1.2	28381
1am2	199	11.73		
1vrbA	342	16.78	b.82.2.11	120450
1mi8A	158	20.34	b.86.1.2	91279
3a2yA	197	29.59		
2xdvA	442	32.74		
3a7sA	228	37.36		
1dq3A	454	38.02	b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2	28380,38798,40585,40586
3k5rA	218	43.74		
2p1gA	249	46.18		
3a2zA	197	52.65		
2je6I	251	56.98	b.40.4.5,b.84.4.2,d.51.1.1	147995,147996,147997
3ddyA	186	57.76		
2wdtA	232	57.92		
1k0wA	231	59.70	c.74.1.1	77220
1ihkA	174	61.22	b.42.1.1	62384
2q4zA	312	61.28		
2daqA	110	63.71	b.34.9.2	131354
1t5hX	504	64.36	e.23.1.1	106449
1cx4A	305	64.48	b.82.3.2,b.82.3.2	59099,59100
3bijA	285	68.84		
1e4cP	215	75.86	c.74.1.1	34969
3lxwA	247	79.87		
3eb8A	358	81.06		
2wjeA	247	83.88		
1zx8A	136	86.54	b.62.1.3	125764
1i8dA	213	86.57	b.43.4.3,b.43.4.3	61953,61954