# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3gt2A	142	0.000231		
2hbwA	235	0.000465		
2evrA	246	0.000474	b.34.11.3,d.3.1.16	132440,132441
3h41A	311	0.002405		
3m1uA	434	0.1629		
3ebqA	170	1.083		
2if6A	186	2.941	d.3.1.21	147651
1wy0A	342	14.92		
1am2	199	17.20		
1q46A	175	18.39	a.60.14.1,b.40.4.5	111594,111595
1am2A	199	19.20	b.86.1.2	28381
2a19A	175	19.31		
2q4zA	312	19.54		
3f1tA	148	20.81		
3a2yA	197	21.33		
1fbnA	230	23.34	c.66.1.3	34181
3ddyA	186	35.36		
1hxrA	115	36.18	b.88.1.1	28392
2hd9A	145	37.32	b.122.1.8	147268
2gc1A	188	37.93	b.82.1.7	134928
3l42A	130	39.04		
3lyiA	126	42.68		
1q8kA	308	44.14	d.58.51.1,a.60.14.1,b.40.4.5	104557,111596,111597
1mi8A	158	44.69	b.86.1.2	91279
1l7lA	121	46.92	b.18.1.16	77790
1emsA	440	52.63	d.13.1.1,d.160.1.1	37520,42086
3a2zA	197	53.04		
1h3zA	109	54.14	b.34.9.2	83471
1go3E	187	54.33	b.40.4.5,d.230.1.1	83054,83055
2xdvA	442	57.94		
2i09A	403	60.46	c.76.1.5,d.327.1.1	136946,136947
1v8qA	85	62.08	b.84.4.1	108428
2joxA	106	64.08		
3a7sA	228	64.25		
3lljA	126	67.27		
1o98A	511	67.92	c.105.1.1,c.76.1.3	86684,86685
1yozA	116	68.70	a.253.1.1	123796
3g98A	111	70.33		
1i8dA	213	78.38	b.43.4.3,b.43.4.3	61953,61954
1cx4A	305	81.12	b.82.3.2,b.82.3.2	59099,59100
2g64A	140	81.15	d.96.1.2	134694
1gm6A	175	83.86	b.60.1.1	70272
1kl9A	182	87.58	a.60.14.1,b.40.4.5	111574,111575
1y23A	145	89.04	d.13.1.1	116394