# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3gt2A	142	0.000549		
2hbwA	235	0.001564		
2evrA	246	0.001635	b.34.11.3,d.3.1.16	132440,132441
3h41A	311	0.005923		
3m1uA	434	0.1031		
3ebqA	170	2.146		
2if6A	186	4.269	d.3.1.21	147651
1wy0A	342	9.570		
1q46A	175	17.83	a.60.14.1,b.40.4.5	111594,111595
2a19A	175	18.65		
3lyiA	126	18.72		
1am2	199	20.81		
1hxrA	115	22.75	b.88.1.1	28392
1am2A	199	22.87	b.86.1.2	28381
1yozA	116	24.02	a.253.1.1	123796
2q4zA	312	28.09		
3l42A	130	35.08		
2gc1A	188	36.21	b.82.1.7	134928
3ddyA	186	43.12		
1l7lA	121	44.11	b.18.1.16	77790
1mi8A	158	44.26	b.86.1.2	91279
3a2yA	197	44.36		
1fbnA	230	46.60	c.66.1.3	34181
1go3E	187	47.36	b.40.4.5,d.230.1.1	83054,83055
1o98A	511	49.83	c.105.1.1,c.76.1.3	86684,86685
1q8kA	308	51.52	d.58.51.1,a.60.14.1,b.40.4.5	104557,111596,111597
3f1tA	148	51.72		
3a7sA	228	55.31		
1h3zA	109	57.55	b.34.9.2	83471
2hd9A	145	58.63	b.122.1.8	147268
1cx4A	305	62.89	b.82.3.2,b.82.3.2	59099,59100
2xdvA	442	70.35		
1v8qA	85	73.83	b.84.4.1	108428
2g64A	140	77.67	d.96.1.2	134694
3a2zA	197	78.06		
2i09A	403	78.84	c.76.1.5,d.327.1.1	136946,136947
3lljA	126	79.26		
1kl9A	182	83.62	a.60.14.1,b.40.4.5	111574,111575
2ww4A	283	85.93		
2f4pA	147	88.80	b.82.1.9	132933