# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3gt2A	142	0.001409		
2hbwA	235	0.001725		
2evrA	246	0.001844	b.34.11.3,d.3.1.16	132440,132441
3h41A	311	0.007531		
3m1uA	434	0.05849		
2if6A	186	3.684	d.3.1.21	147651
3ebqA	170	3.704		
2a19A	175	10.16		
1q46A	175	13.42	a.60.14.1,b.40.4.5	111594,111595
1yozA	116	14.02	a.253.1.1	123796
1l7lA	121	15.56	b.18.1.16	77790
1hxrA	115	19.06	b.88.1.1	28392
1fbnA	230	21.78	c.66.1.3	34181
2q4zA	312	25.23		
1wy0A	342	26.91		
1q8kA	308	32.01	d.58.51.1,a.60.14.1,b.40.4.5	104557,111596,111597
2hd9A	145	32.88	b.122.1.8	147268
1i8dA	213	34.94	b.43.4.3,b.43.4.3	61953,61954
3ddyA	186	36.76		
3a2yA	197	38.90		
1wi5A	119	41.82	b.40.4.5	114661
1am2	199	44.46		
1kl9A	182	44.76	a.60.14.1,b.40.4.5	111574,111575
1fiqB	350	46.81	d.87.2.1,d.145.1.3	40229,41760
1v8qA	85	50.45	b.84.4.1	108428
3a35A	190	50.60		
1cx4A	305	51.89	b.82.3.2,b.82.3.2	59099,59100
3l42A	130	53.91		
1go3E	187	55.10	b.40.4.5,d.230.1.1	83054,83055
3lyiA	126	56.37		
2xdvA	442	57.70		
2gc1A	188	60.75	b.82.1.7	134928
3a2zA	197	61.80		
1am2A	199	61.99	b.86.1.2	28381
3f1tA	148	63.38		
1mi8A	158	65.44	b.86.1.2	91279
3bijA	285	65.65		
2i09A	403	71.27	c.76.1.5,d.327.1.1	136946,136947
1kzlA	208	72.11	b.43.4.3,b.43.4.3	77635,77636
2ww4A	283	74.84		
2g64A	140	81.98	d.96.1.2	134694