# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2evrA	246	0.001751	b.34.11.3,d.3.1.16	132440,132441
2hbwA	235	0.001824		
3gt2A	142	0.002025		
3h41A	311	0.006403		
3m1uA	434	0.1138		
2if6A	186	4.236	d.3.1.21	147651
3ebqA	170	4.237		
2a19A	175	13.37		
1am2	199	17.14		
1q46A	175	18.05	a.60.14.1,b.40.4.5	111594,111595
1l7lA	121	18.14	b.18.1.16	77790
1yozA	116	19.38	a.253.1.1	123796
1am2A	199	20.12	b.86.1.2	28381
2xdvA	442	20.60		
1fbnA	230	26.00	c.66.1.3	34181
3ddyA	186	28.64		
2gc1A	188	28.92	b.82.1.7	134928
1go3E	187	29.70	b.40.4.5,d.230.1.1	83054,83055
1hxrA	115	30.23	b.88.1.1	28392
3a2yA	197	32.81		
2q4zA	312	37.00		
1v8qA	85	43.91	b.84.4.1	108428
2f4pA	147	46.43	b.82.1.9	132933
1wy0A	342	46.74		
1mi8A	158	47.65	b.86.1.2	91279
1wi5A	119	50.54	b.40.4.5	114661
2w87A	139	52.26		
3a2zA	197	55.19		
1kl9A	182	56.35	a.60.14.1,b.40.4.5	111574,111575
1cx4A	305	56.40	b.82.3.2,b.82.3.2	59099,59100
2hd9A	145	56.49	b.122.1.8	147268
2p3uA	52	60.87	g.3.11.1	149188
2pr3B	51	60.93	g.3.11.1	149798
2khaA	130	65.70		
3a35A	190	67.71		
2vzpA	127	67.71		
1h3zA	109	68.19	b.34.9.2	83471
1z6eB	52	69.75	g.3.11.1	124519
3lyiA	126	70.78		
1i8dA	213	72.91	b.43.4.3,b.43.4.3	61953,61954
1kzlA	208	80.95	b.43.4.3,b.43.4.3	77635,77636
3g98A	111	84.03		
2jkhL	55	87.13		
3lljA	126	88.83