# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3gt2A	142	0.000183		
2hbwA	235	0.000280		
2evrA	246	0.000336	b.34.11.3,d.3.1.16	132440,132441
3h41A	311	0.002404		
3m1uA	434	0.2851		
2if6A	186	0.6061	d.3.1.21	147651
3ebqA	170	2.190		
1fbnA	230	4.337	c.66.1.3	34181
1g8sA	230	9.004	c.66.1.3	90507
1yozA	116	10.96	a.253.1.1	123796
2daqA	110	19.60	b.34.9.2	131354
2joxA	106	30.21		
1vrbA	342	32.70	b.82.2.11	120450
1k0wA	231	34.73	c.74.1.1	77220
2gc1A	188	38.59	b.82.1.7	134928
1t3kA	152	47.27	c.46.1.1	106357
3a2yA	197	49.07		
3lxwA	247	49.39		
1hl9A	449	50.46	b.71.1.3,c.1.8.11	90650,90651
1t5hX	504	56.95	e.23.1.1	106449
1iuzA	98	58.86	b.6.1.1	22861
3k5rA	218	59.85		
2hrvA	142	62.75	b.47.1.4	26429
2cokA	113	63.50		
2zwaA	695	67.96		
2kmsA	115	72.48		
2vobA	652	75.50		
1xgsA	295	77.87	a.4.5.25,d.127.1.1	16216,41153
1yizA	429	78.31	c.67.1.1	123375
3a7sA	228	82.27		
3mvsA	210	86.99		
1aukA	489	87.82	c.76.1.2	35030
1mai	131	89.79