# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hbwA	235	0.03953		
2evrA	246	0.06202	b.34.11.3,d.3.1.16	132440,132441
3h41A	311	0.1280		
2if6A	186	6.569	d.3.1.21	147651
1h3zA	109	7.456	b.34.9.2	83471
3gt2A	142	10.37		
3ebqA	170	13.23		
1vhxA	150	18.07	c.55.3.8	100712
1n27A	96	21.13	b.34.9.2	91549
1ne8A	117	23.43	b.34.6.2	80424
3bjkA	153	26.32		
2q2bA	179	32.22		
1qftA	175	33.19	b.60.1.1	27151
2daqA	110	33.57	b.34.9.2	131354
2eveA	157	38.72	b.122.1.8	132427
3m1mA	335	39.06		
1i9gA	280	40.33	c.66.1.13	62090
3lh5A	251	40.98		
1ub4A	110	42.23	b.34.6.2	88399
3l42A	130	44.58		
2wekA	341	45.38		
3dlmA	213	49.93		
3go5A	285	50.08		
2pbcA	102	53.08		
1yliA	153	57.43	d.38.1.1	123651
3eaeA	93	59.45		
3e17A	88	59.81		
2qq2A	193	66.22		
1kl9A	182	68.27	a.60.14.1,b.40.4.5	111574,111575
3llrA	154	69.58		
2gpjA	252	71.09		
2c0cA	362	71.77		
2jdiA	510	79.95	a.69.1.1,b.49.1.1,c.37.1.11	145683,145684,145685
2waoA	341	84.17		
1vj0A	380	88.82	b.35.1.2,c.2.1.1	100786,100787
1vpmA	169	89.40	d.38.1.1	113967
1khcA	147	89.83	b.34.9.2	68608