# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2evrA	246	0.001225	b.34.11.3,d.3.1.16	132440,132441
2hbwA	235	0.002947		
3h41A	311	0.005719		
3gt2A	142	0.01027		
2if6A	186	0.05193	d.3.1.21	147651
3m1uA	434	2.478		
1yozA	116	3.933	a.253.1.1	123796
3ebqA	170	4.439		
1z6mA	175	15.11	c.47.1.13	124529
1yf2A	425	27.16	d.287.1.2,d.287.1.2	123042,123043
1ne8A	117	36.81	b.34.6.2	80424
2k3aA	155	37.42		
2im9A	333	39.21	d.3.1.13	137508
2io8A	619	46.72	c.30.1.7,d.3.1.15,d.142.1.8	137549,137550,137551
1tcaA	317	47.94	c.69.1.17	34726
2hldD	478	50.40		
3n0lA	417	57.96		
2fg1A	158	58.64	c.50.1.2	133400
1eu1A	780	60.35	b.52.2.2,c.81.1.1	26903,35311
1khcA	147	63.65	b.34.9.2	68608
3f6pA	120	67.24		
2ptmA	198	69.81		
2eyqA	1151	72.22	b.34.18.1,c.37.1.19,c.37.1.19,c.37.1.19,c.37.1.19,d.315.1.1	132590,132591,132592,132593,132594,132595
2do3A	69	72.90	b.34.5.5	131596
1k0iA	394	74.43	c.3.1.2,d.16.1.2	67942,67943
2bw8A	227	75.37	b.29.1.11	129324
2p1gA	249	77.54		
1n7kA	234	82.22	c.1.10.1	85374
2a19A	175	82.86		
1tzzA	392	87.81	c.1.11.2,d.54.1.1	112896,112897