# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2evrA	246	0.000849	b.34.11.3,d.3.1.16	132440,132441
2hbwA	235	0.002027		
3h41A	311	0.002806		
3gt2A	142	0.007976		
2if6A	186	0.08191	d.3.1.21	147651
3m1uA	434	2.573		
1yozA	116	3.941	a.253.1.1	123796
3ebqA	170	5.745		
1yf2A	425	12.08	d.287.1.2,d.287.1.2	123042,123043
1z6mA	175	13.30	c.47.1.13	124529
2k3aA	155	24.21		
2hldD	478	31.81		
2a19A	175	33.19		
2ptmA	198	38.46		
2im9A	333	39.04	d.3.1.13	137508
3go5A	285	43.01		
2p1gA	249	43.81		
1k0iA	394	46.20	c.3.1.2,d.16.1.2	67942,67943
1khcA	147	54.29	b.34.9.2	68608
2fg1A	158	55.21	c.50.1.2	133400
1ydxA	406	55.68	d.287.1.2,d.287.1.2	123004,123005
1eu1A	780	56.18	b.52.2.2,c.81.1.1	26903,35311
2io8A	619	56.25	c.30.1.7,d.3.1.15,d.142.1.8	137549,137550,137551
1ne8A	117	59.86	b.34.6.2	80424
1h8eA	510	61.22	a.69.1.1,b.49.1.1,c.37.1.11	60738,60739,60740
2bw8A	227	63.06	b.29.1.11	129324
2eyqA	1151	66.94	b.34.18.1,c.37.1.19,c.37.1.19,c.37.1.19,c.37.1.19,d.315.1.1	132590,132591,132592,132593,132594,132595
2x47A	235	73.05		
1b12A	248	73.45	b.87.1.2	28388
3n0lA	417	77.55		
1z1bA	356	82.31	d.10.1.4,d.163.1.1	124346,124347
2hivA	621	83.26		
2b69A	343	85.98	c.2.1.2	127974
2i61A	62	87.59		
1tcaA	317	88.69	c.69.1.17	34726