# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2evrA	246	0.002522	b.34.11.3,d.3.1.16	132440,132441
2hbwA	235	0.003510		
3h41A	311	0.004710		
3gt2A	142	0.008927		
2if6A	186	0.03889	d.3.1.21	147651
3m1uA	434	0.4293		
1yozA	116	2.672	a.253.1.1	123796
3ebqA	170	4.023		
2k3aA	155	9.118		
1yf2A	425	16.77	d.287.1.2,d.287.1.2	123042,123043
2fe3A	145	23.23		
3n0lA	417	23.83		
2ptmA	198	28.36		
2p1gA	249	28.42		
3gbxA	420	30.67		
1z6mA	175	31.23	c.47.1.13	124529
3h6xA	148	36.95		
1ydxA	406	39.39	d.287.1.2,d.287.1.2	123004,123005
3dqyA	106	40.54		
2im9A	333	41.78	d.3.1.13	137508
1p9lA	245	42.39	c.2.1.3,d.81.1.3	94393,94394
2b69A	343	42.50	c.2.1.2	127974
2eyqA	1151	45.33	b.34.18.1,c.37.1.19,c.37.1.19,c.37.1.19,c.37.1.19,d.315.1.1	132590,132591,132592,132593,132594,132595
3l60A	250	46.05		
3maeA	256	49.80		
2qpzA	103	53.26		
1tcaA	317	56.61	c.69.1.17	34726
3ecdA	425	58.50		
3lqwA	163	59.27		
3l2hA	162	60.91		
1khcA	147	63.69	b.34.9.2	68608
1eu1A	780	70.41	b.52.2.2,c.81.1.1	26903,35311
2hldD	478	74.88		
2q8kA	401	77.33		
1n7kA	234	78.77	c.1.10.1	85374
1z1bA	356	81.21	d.10.1.4,d.163.1.1	124346,124347
1v5rA	97	89.12	d.82.4.1	119854
3f6pA	120	89.64