# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2evrA	246	0.007939	b.34.11.3,d.3.1.16	132440,132441
2hbwA	235	0.01217		
3gt2A	142	0.01475		
3h41A	311	0.01620		
2if6A	186	0.5901	d.3.1.21	147651
3m1uA	434	1.661		
1z6mA	175	15.87	c.47.1.13	124529
3ebqA	170	18.06		
1yozA	116	19.00	a.253.1.1	123796
1yf2A	425	27.61	d.287.1.2,d.287.1.2	123042,123043
2bllA	345	40.90	c.2.1.2	128733
2k3aA	155	42.33		
1ajsA	412	42.47	c.67.1.1	34276
2io8A	619	43.96	c.30.1.7,d.3.1.15,d.142.1.8	137549,137550,137551
2im9A	333	58.31	d.3.1.13	137508
3dqyA	106	60.32		
3in6A	148	67.59		
1eu1A	780	67.99	b.52.2.2,c.81.1.1	26903,35311
2ptmA	198	69.90		
1tcaA	317	71.02	c.69.1.17	34726
2qxyA	142	71.85		
2qpzA	103	71.93		
1ydxA	406	75.20	d.287.1.2,d.287.1.2	123004,123005
1z1bA	356	75.55	d.10.1.4,d.163.1.1	124346,124347
2hivA	621	76.82		
2p1gA	249	79.58		
3go5A	285	80.66		
1khcA	147	80.82	b.34.9.2	68608
1k0iA	394	83.57	c.3.1.2,d.16.1.2	67942,67943
3n0lA	417	87.23		
1n7kA	234	88.33	c.1.10.1	85374