# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2evrA	246	0.003482	b.34.11.3,d.3.1.16	132440,132441
2hbwA	235	0.005545		
3gt2A	142	0.008102		
3h41A	311	0.008382		
2if6A	186	0.1623	d.3.1.21	147651
3m1uA	434	1.583		
1yozA	116	6.832	a.253.1.1	123796
3ebqA	170	8.069		
1z6mA	175	9.026	c.47.1.13	124529
1yf2A	425	22.65	d.287.1.2,d.287.1.2	123042,123043
2k3aA	155	32.44		
1ajsA	412	36.71	c.67.1.1	34276
1tcaA	317	42.87	c.69.1.17	34726
2bllA	345	43.21	c.2.1.2	128733
2im9A	333	47.19	d.3.1.13	137508
1ydxA	406	49.17	d.287.1.2,d.287.1.2	123004,123005
2a19A	175	56.34		
2eyqA	1151	58.36	b.34.18.1,c.37.1.19,c.37.1.19,c.37.1.19,c.37.1.19,d.315.1.1	132590,132591,132592,132593,132594,132595
2qxyA	142	58.62		
3go5A	285	60.66		
3in6A	148	63.69		
1k0iA	394	64.86	c.3.1.2,d.16.1.2	67942,67943
2ptmA	198	67.90		
2fg1A	158	68.18	c.50.1.2	133400
2i61A	62	70.11		
2io8A	619	71.00	c.30.1.7,d.3.1.15,d.142.1.8	137549,137550,137551
2p1gA	249	72.18		
1khcA	147	73.25	b.34.9.2	68608
1ne8A	117	76.71	b.34.6.2	80424
2pn1A	331	79.21		
3n0lA	417	89.31		
3jwpA	265	89.54