# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2evrA	246	0.006484	b.34.11.3,d.3.1.16	132440,132441
2hbwA	235	0.009539		
3gt2A	142	0.01369		
3h41A	311	0.01397		
2if6A	186	0.3233	d.3.1.21	147651
3m1uA	434	1.757		
1z6mA	175	8.952	c.47.1.13	124529
3ebqA	170	10.90		
1yozA	116	11.38	a.253.1.1	123796
1yf2A	425	22.94	d.287.1.2,d.287.1.2	123042,123043
2bllA	345	35.46	c.2.1.2	128733
1tcaA	317	38.81	c.69.1.17	34726
2k3aA	155	42.21		
2qxyA	142	57.98		
1ajsA	412	61.11	c.67.1.1	34276
1ydxA	406	67.07	d.287.1.2,d.287.1.2	123004,123005
2a19A	175	71.98		
2i61A	62	74.53		
3go5A	285	75.67		
3in6A	148	77.29		
2im9A	333	80.58	d.3.1.13	137508
2io8A	619	81.59	c.30.1.7,d.3.1.15,d.142.1.8	137549,137550,137551
1khcA	147	83.30	b.34.9.2	68608
2eyqA	1151	84.31	b.34.18.1,c.37.1.19,c.37.1.19,c.37.1.19,c.37.1.19,d.315.1.1	132590,132591,132592,132593,132594,132595
3f6pA	120	85.53