# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2evrA	246	0.000114	b.34.11.3,d.3.1.16	132440,132441
2hbwA	235	0.000250		
3h41A	311	0.000782		
3gt2A	142	0.001814		
2if6A	186	0.001902	d.3.1.21	147651
3m1uA	434	0.3027		
1yozA	116	3.067	a.253.1.1	123796
1dq3A	454	8.044	b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2	28380,38798,40585,40586
1z6mA	175	15.60	c.47.1.13	124529
1e4cP	215	19.11	c.74.1.1	34969
1h3zA	109	20.14	b.34.9.2	83471
1jvbA	347	22.48	b.35.1.2,c.2.1.1	77181,77182
3ebqA	170	23.27		
3i4cA	347	24.91		
2p1gA	249	26.68		
2k3aA	155	29.08		
1ub4A	110	30.16	b.34.6.2	88399
1ne8A	117	31.68	b.34.6.2	80424
1yf2A	425	32.85	d.287.1.2,d.287.1.2	123042,123043
3g7nA	258	35.55		
1h2bA	359	36.41	b.35.1.2,c.2.1.1	90543,90544
2qpzA	103	36.73		
1b12A	248	37.37	b.87.1.2	28388
2fk5A	200	43.77		
3dqyA	106	45.24		
1i24A	404	45.78	c.2.1.2	83663
1ypxA	375	46.76		
1pl8A	356	47.44	b.35.1.2,c.2.1.1	94878,94879
2im9A	333	47.91	d.3.1.13	137508
1unnC	115	52.17	d.240.1.1	99680
1khcA	147	52.29	b.34.9.2	68608
1k0iA	394	52.81	c.3.1.2,d.16.1.2	67942,67943
1snyA	267	59.67	c.2.1.2	105833
2pn1A	331	61.41		
2dlxA	153	62.64	c.47.1.24	146543
2eyqA	1151	64.64	b.34.18.1,c.37.1.19,c.37.1.19,c.37.1.19,c.37.1.19,d.315.1.1	132590,132591,132592,132593,132594,132595
1pswA	348	70.47	c.87.1.7	88287
1eny	268	71.41		
2opiA	212	71.42		
2je6I	251	72.78	b.40.4.5,b.84.4.2,d.51.1.1	147995,147996,147997
1kolA	398	75.49	b.35.1.2,c.2.1.1	77474,77475
1wvgA	359	78.34	c.2.1.2	121339
1thxA	115	79.53	c.47.1.1	32732
1xwwA	157	80.31		
2g1kA	176	84.93	c.37.1.2	134519
2fd4A	122	86.45		
2hafA	211	87.62	d.310.1.1	136286
2gt1A	326	89.01		
3hz4A	140	89.54		
2io8A	619	89.86	c.30.1.7,d.3.1.15,d.142.1.8	137549,137550,137551