# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2evrA	246	0.001167	b.34.11.3,d.3.1.16	132440,132441
2hbwA	235	0.002221		
3gt2A	142	0.003452		
3h41A	311	0.004372		
2if6A	186	0.06134	d.3.1.21	147651
3ebqA	170	1.497		
3m1uA	434	1.688		
1yozA	116	5.940	a.253.1.1	123796
1z6mA	175	6.908	c.47.1.13	124529
2k3aA	155	11.21		
1yf2A	425	21.32	d.287.1.2,d.287.1.2	123042,123043
2io8A	619	30.33	c.30.1.7,d.3.1.15,d.142.1.8	137549,137550,137551
1tcaA	317	33.19	c.69.1.17	34726
2hldD	478	38.97		
2ptmA	198	40.22		
1ypxA	375	42.66		
1k0iA	394	44.58	c.3.1.2,d.16.1.2	67942,67943
1khcA	147	47.47	b.34.9.2	68608
1ajsA	412	48.25	c.67.1.1	34276
2eyqA	1151	50.75	b.34.18.1,c.37.1.19,c.37.1.19,c.37.1.19,c.37.1.19,d.315.1.1	132590,132591,132592,132593,132594,132595
2im9A	333	51.94	d.3.1.13	137508
1ne8A	117	57.71	b.34.6.2	80424
3dqyA	106	61.90		
1eu1A	780	64.33	b.52.2.2,c.81.1.1	26903,35311
2p1gA	249	66.52		
2do3A	69	70.33	b.34.5.5	131596
2qpzA	103	73.19		
1sfxA	109	76.51	a.4.5.50	105505
2dk7A	73	78.68		
1n7kA	234	82.03	c.1.10.1	85374
2fvgA	340	85.31	b.49.3.1,c.56.5.4	134201,134202
2pn1A	331	87.08		
3f6pA	120	88.70		
1t3tA	1303	89.53	a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	106381,106382,106383,106384,106385,106386,106387