# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2evrA	246	0.002266	b.34.11.3,d.3.1.16	132440,132441
2hbwA	235	0.002943		
3h41A	311	0.005533		
3gt2A	142	0.009879		
2if6A	186	0.08758	d.3.1.21	147651
3m1uA	434	0.8551		
1yozA	116	1.312	a.253.1.1	123796
3ebqA	170	6.767		
1yf2A	425	14.86	d.287.1.2,d.287.1.2	123042,123043
1z6mA	175	15.02	c.47.1.13	124529
1ydxA	406	18.29	d.287.1.2,d.287.1.2	123004,123005
1tcaA	317	32.20	c.69.1.17	34726
2k3aA	155	42.08		
2eyqA	1151	47.66	b.34.18.1,c.37.1.19,c.37.1.19,c.37.1.19,c.37.1.19,d.315.1.1	132590,132591,132592,132593,132594,132595
2ptmA	198	56.83		
3n0lA	417	63.53		
3dqyA	106	65.19		
2b69A	343	66.73	c.2.1.2	127974
1n7kA	234	72.95	c.1.10.1	85374
2bllA	345	81.41	c.2.1.2	128733
3gbxA	420	84.85		
3f6pA	120	85.81