# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2evrA	246	0.000315	b.34.11.3,d.3.1.16	132440,132441
2hbwA	235	0.000562		
3h41A	311	0.000911		
2if6A	186	0.003253	d.3.1.21	147651
3gt2A	142	0.003917		
3m1uA	434	0.9137		
1yozA	116	6.098	a.253.1.1	123796
3ebqA	170	10.26		
1k0wA	231	10.69	c.74.1.1	77220
2eyqA	1151	12.88	b.34.18.1,c.37.1.19,c.37.1.19,c.37.1.19,c.37.1.19,d.315.1.1	132590,132591,132592,132593,132594,132595
2io8A	619	16.31	c.30.1.7,d.3.1.15,d.142.1.8	137549,137550,137551
1b12A	248	16.69	b.87.1.2	28388
1ne8A	117	19.09	b.34.6.2	80424
3ip1A	404	26.24		
2oqhA	385	26.81		
2k3aA	155	28.94		
2p1gA	249	30.69		
2fd4A	122	30.85		
1e4cP	215	31.00	c.74.1.1	34969
1h2bA	359	35.73	b.35.1.2,c.2.1.1	90543,90544
1vj0A	380	41.75	b.35.1.2,c.2.1.1	100786,100787
1ydxA	406	44.35	d.287.1.2,d.287.1.2	123004,123005
2gl5A	410	47.92	c.1.11.2,d.54.1.1	135336,135337
1khcA	147	49.17	b.34.9.2	68608
3gz5A	240	50.53		
1dq3A	454	52.79	b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2	28380,38798,40585,40586
1jvbA	347	55.03	b.35.1.2,c.2.1.1	77181,77182
3i4cA	347	58.49		
1z6mA	175	58.71	c.47.1.13	124529
2fk5A	200	63.87		
2pbrA	195	68.18		
3g7nA	258	71.57		
2ejbA	189	79.52		
1zo0A	126	80.20	d.108.1.7	125416
1iibA	106	82.05	c.44.2.1	32648
1gwyA	175	84.09	b.97.1.1	83356
1unnC	115	85.18	d.240.1.1	99680
1ub4A	110	85.80	b.34.6.2	88399
3dqyA	106	88.37		
3jurA	448	88.38		
3i3lA	591	89.82