# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2if6A	186	2.143	d.3.1.21	147651
2hbwA	235	2.588		
2evrA	246	3.952	b.34.11.3,d.3.1.16	132440,132441
3h41A	311	5.958		
3ebqA	170	10.79		
2daqA	110	14.94	b.34.9.2	131354
1fhoA	119	16.41	b.55.1.1	26982
2p8eA	307	20.55		
1h0hA	977	20.73	b.52.2.2,c.81.1.1	76435,76436
1khcA	147	21.88	b.34.9.2	68608
1nm2A	317	23.91	c.19.1.1,d.58.23.1	80654,80655
1pl8A	356	27.62	b.35.1.2,c.2.1.1	94878,94879
1ub4A	110	32.35	b.34.6.2	88399
2napA	723	32.66	b.52.2.2,c.81.1.1	26926,35334
2rexB	197	35.35		
1ne8A	117	36.99	b.34.6.2	80424
2pq6A	482	38.78	c.87.1.10	149785
1h3zA	109	44.22	b.34.9.2	83471
2pnlA	203	45.18		
1at0A	145	46.35	b.86.1.1	28374
2ivfA	976	46.87		
1ks9A	291	48.83	a.100.1.7,c.2.1.6	68857,68858
2nmmA	135	50.34	d.322.1.1	138372
2i6eA	301	50.82	c.94.1.1	147520
1at0	145	51.69		
1ixcA	294	52.96	a.4.5.37,c.94.1.1	83764,83765
1hjrA	158	53.88	c.55.3.6	33727
3bdiA	207	63.13		
1vs0A	310	63.89		
1kl9A	182	66.15	a.60.14.1,b.40.4.5	111574,111575
3gqeA	168	70.25		
2hb5A	164	70.33		
1m1fA	110	70.66	b.34.6.2	78401
1k6xA	352	70.88	c.2.1.2	68238
1kqfA	1015	72.92	b.52.2.2,c.81.1.1	72871,72872
2vpzA	765	73.36		
2cyjA	118	74.78	c.103.1.1	131026
3bc1A	195	75.91		
1ihnA	113	76.19	c.103.1.1	62388
1r0mA	375	76.51	c.1.11.2,d.54.1.1	104747,104748
2ptfA	233	77.45	b.45.1.4	149836
3eaeA	93	78.22		
1vhxA	150	81.55	c.55.3.8	100712
1p5qA	336	81.77	a.118.8.1,d.26.1.1	104068,104069
2o56A	407	83.83		
1jl2A	156	88.01	c.55.3.1	66822
2de6D	115	88.34		
3llrA	154	89.60