# List of top-scoring protein chains for T0630.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2k1gA	135	0.01393		
2hbwA	235	0.02803		
3h41A	311	0.1630		
2evrA	246	0.3764	b.34.11.3,d.3.1.16	132440,132441
1yozA	116	0.4327	a.253.1.1	123796
3eaeA	93	6.728		
3gt2A	142	10.09		
2nn6H	308	11.24	b.40.4.5,b.84.4.2,d.51.1.1	148310,148311,148312
2if6A	186	12.03	d.3.1.21	147651
3kcpA	321	15.75		
3ebqA	170	16.26		
1n27A	96	18.80	b.34.9.2	91549
1pzxA	289	21.59	c.119.1.1	95484
3a5cA	578	22.74		
2nluA	100	25.52	b.34.9.2	148284
3gqbA	578	25.93		
1ri0A	110	26.40	b.34.9.2	111806
2b8aA	110	27.68	b.34.9.2	128067
2idcA	179	28.96		
2ew0A	192	32.73	d.310.1.1	132445
3ln3A	324	33.51		
2wwqY	79	42.24		
2qamW	84	44.93	b.84.4.1	150263
3i1nW	85	45.30		
2klsA	164	46.85		
2qvkA	192	49.59		
1oazA	123	52.01	c.47.1.1	92741
3hxjA	330	53.49		
3f81A	183	56.49		
1vhrA	184	56.78	c.45.1.1	32651
2kltA	163	58.16		
2xdvA	442	58.28		
1qqrA	138	59.38	d.15.5.1	37721
1thoA	109	62.20	c.47.1.1	32722
1gp7A	151	63.47	a.133.1.2	76251
2qa2A	499	68.71		
1tqhA	247	74.63	c.69.1.29	107225
2ba0A	229	76.20	b.40.4.5,b.84.4.2,d.51.1.1	146096,146097,146098
2frmA	321	80.70		
3dyrA	111	80.90		
1dj0A	264	81.98	d.265.1.1	90337
1r1dA	247	84.03	c.69.1.29	96813
2ewdA	317	85.74		
2nqpA	270	86.11	d.265.1.1	138474
2gfuA	134	86.93		
2eg2A	112	89.05