# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3h41A	311	0.004296		
3gt2A	142	0.005203		
2hbwA	235	0.006752		
2evrA	246	0.01076	b.34.11.3,d.3.1.16	132440,132441
2if6A	186	0.1160	d.3.1.21	147651
3ebqA	170	3.408		
2vobA	652	4.676		
2io8A	619	9.98	c.30.1.7,d.3.1.15,d.142.1.8	137549,137550,137551
1yozA	116	12.84	a.253.1.1	123796
3hbxA	502	16.63		
2napA	723	17.07	b.52.2.2,c.81.1.1	26926,35334
2bw8A	227	18.28	b.29.1.11	129324
1vmeA	410	19.49	c.23.5.1,d.157.1.3	108893,108894
3m1uA	434	19.66		
2k3aA	155	20.93		
2fg1A	158	22.37	c.50.1.2	133400
3eaeA	93	29.12		
2ivfA	976	29.97		
2cspA	130	30.94	b.1.2.1	130779
2a19A	175	31.22		
1eu1A	780	31.70	b.52.2.2,c.81.1.1	26903,35311
1uxy	340	38.11		
1at0	145	38.53		
3ewoA	177	40.53		
1h3zA	109	51.49	b.34.9.2	83471
3a2zA	197	55.06		
1mzbA	136	57.77	a.4.5.42	91497
1i7pA	274	62.57	b.43.4.2,c.25.1.1	66048,66049
3hidA	432	64.87		
3eyyA	145	65.26		
2i61A	62	66.92		
3ggmA	81	67.03		
1at0A	145	69.13	b.86.1.1	28374
2afcA	168	70.23	c.50.1.2	126676
1hbq	183	71.15		
2ja9A	175	71.36	b.40.4.5,d.51.1.1	147950,147951
2vgiA	528	73.65		
1rjwA	339	74.85	b.35.1.2,c.2.1.1	97582,97583
2do3A	69	81.41	b.34.5.5	131596
3a2yA	197	82.63		
2w57A	150	84.08		
3a8yA	392	86.22		
2ptmA	198	87.56		
1t9hA	307	89.22	b.40.4.5,c.37.1.8	112358,112359
2iv2X	715	89.67	b.52.2.2,c.81.1.1	137714,137715