# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hbwA	235	0.01599		
3h41A	311	0.01642		
3gt2A	142	0.01786		
2evrA	246	0.02559	b.34.11.3,d.3.1.16	132440,132441
2if6A	186	0.09526	d.3.1.21	147651
3ebqA	170	5.609		
1yozA	116	8.231	a.253.1.1	123796
2k3aA	155	9.253		
3m1uA	434	11.67		
2vobA	652	14.56		
2io8A	619	15.60	c.30.1.7,d.3.1.15,d.142.1.8	137549,137550,137551
2napA	723	17.91	b.52.2.2,c.81.1.1	26926,35334
2vt8A	153	19.05		
2fe3A	145	20.10		
2ivfA	976	24.39		
2bw8A	227	25.82	b.29.1.11	129324
1eu1A	780	31.63	b.52.2.2,c.81.1.1	26903,35311
2w57A	150	32.15		
3md7A	293	34.93		
1mzbA	136	35.58	a.4.5.42	91497
2p1gA	249	36.05		
2ptmA	198	36.54		
1u79A	129	37.75	d.26.1.1	107714
1hbq	183	38.61		
2i61A	62	40.08		
3hbxA	502	40.55		
1i7pA	274	41.35	b.43.4.2,c.25.1.1	66048,66049
2i7fA	108	42.15		
2d1vA	108	42.30		
1rjwA	339	45.81	b.35.1.2,c.2.1.1	97582,97583
3a2yA	197	47.22		
3ddyA	186	49.10		
3eaeA	93	50.28		
3a2zA	197	51.56		
2h0vA	338	55.07		
1at0	145	57.83		
2c60A	111	59.18	d.15.2.2	129966
3llrA	154	60.31		
3dfhA	394	61.48		
2iv2X	715	62.39	b.52.2.2,c.81.1.1	137714,137715
3ggmA	81	62.60		
3bpzA	202	64.88		
1h3zA	109	66.85	b.34.9.2	83471
1uxy	340	67.36		
2i6cA	160	70.18	d.108.1.1	137095
1v5rA	97	73.96	d.82.4.1	119854
3iam3	783	75.17		
1sfnA	246	76.12	b.82.1.11	105496
1qx4A	274	76.52	b.43.4.2,c.25.1.1	104624,104625
2pfkA	320	80.11	c.89.1.1	35577
2pmuA	110	81.05		
2v3vA	723	82.29	b.52.2.2,c.81.1.1	152463,152464
2ja9A	175	83.18	b.40.4.5,d.51.1.1	147950,147951
3eyyA	145	84.79		
2nqlA	388	85.91		
1mb3A	124	88.79	c.23.1.1	78907
2do3A	69	89.31	b.34.5.5	131596