# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3h41A	311	0.01185		
3gt2A	142	0.01207		
2hbwA	235	0.01811		
2evrA	246	0.02286	b.34.11.3,d.3.1.16	132440,132441
2if6A	186	0.2708	d.3.1.21	147651
3ebqA	170	3.513		
2vobA	652	10.03		
2k3aA	155	16.64		
3m1uA	434	16.77		
3hbxA	502	16.92		
2io8A	619	22.38	c.30.1.7,d.3.1.15,d.142.1.8	137549,137550,137551
1i7pA	274	22.85	b.43.4.2,c.25.1.1	66048,66049
1at0	145	39.41		
1d8cA	723	39.44	c.1.13.1	29325
3ewoA	177	42.79		
3eaeA	93	43.33		
3a2zA	197	43.43		
2bw8A	227	45.74	b.29.1.11	129324
3a2yA	197	51.07		
3iccA	255	51.44		
1mzbA	136	52.53	a.4.5.42	91497
1dz3A	130	56.17	c.23.1.1	31105
1yozA	116	56.79	a.253.1.1	123796
2i61A	62	58.50		
2vt8A	153	60.12		
2fg1A	158	60.73	c.50.1.2	133400
2jo6A	113	60.87	b.33.1.3	148154
1vmeA	410	63.46	c.23.5.1,d.157.1.3	108893,108894
3ddyA	186	63.64		
1qx4A	274	64.91	b.43.4.2,c.25.1.1	104624,104625
1rjwA	339	66.51	b.35.1.2,c.2.1.1	97582,97583
1at0A	145	67.61	b.86.1.1	28374
3dfhA	394	67.90		
1ypxA	375	70.14		
3fi7A	183	71.24		
2napA	723	72.25	b.52.2.2,c.81.1.1	26926,35334
2w57A	150	73.10		
1mb3A	124	73.49	c.23.1.1	78907
2oh1A	179	74.18		
2jl1A	287	79.02		
2ptmA	198	79.40		
2c60A	111	81.58	d.15.2.2	129966
2h0vA	338	81.93		
1uxy	340	82.20		
2p1gA	249	83.21		
1eu1A	780	83.59	b.52.2.2,c.81.1.1	26903,35311
3ejfA	176	84.74