# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3h41A	311	0.008281		
3gt2A	142	0.009132		
2hbwA	235	0.01288		
2evrA	246	0.01482	b.34.11.3,d.3.1.16	132440,132441
2if6A	186	0.2000	d.3.1.21	147651
3ebqA	170	3.304		
3m1uA	434	7.496		
2vobA	652	9.786		
2k3aA	155	15.41		
3hbxA	502	16.16		
1yozA	116	22.87	a.253.1.1	123796
2io8A	619	23.66	c.30.1.7,d.3.1.15,d.142.1.8	137549,137550,137551
1i7pA	274	24.29	b.43.4.2,c.25.1.1	66048,66049
3eaeA	93	24.32		
2fg1A	158	29.04	c.50.1.2	133400
2bw8A	227	33.41	b.29.1.11	129324
3ewoA	177	44.51		
1d8cA	723	48.56	c.1.13.1	29325
1rjwA	339	50.02	b.35.1.2,c.2.1.1	97582,97583
3fi7A	183	54.20		
1dz3A	130	55.13	c.23.1.1	31105
2i61A	62	55.70		
2vt8A	153	56.41		
3dfhA	394	56.83		
1at0	145	57.56		
3a2zA	197	58.13		
2ja9A	175	59.37	b.40.4.5,d.51.1.1	147950,147951
1iibA	106	63.27	c.44.2.1	32648
2ivfA	976	63.98		
1vmeA	410	64.93	c.23.5.1,d.157.1.3	108893,108894
2napA	723	66.08	b.52.2.2,c.81.1.1	26926,35334
3iccA	255	66.19		
1mzbA	136	70.20	a.4.5.42	91497
1qx4A	274	70.86	b.43.4.2,c.25.1.1	104624,104625
3a2yA	197	71.17		
2a19A	175	71.59		
1hbq	183	74.67		
3ievA	308	75.52		
3ejfA	176	76.50		
1mb3A	124	77.58	c.23.1.1	78907
2afcA	168	78.44	c.50.1.2	126676
1ypxA	375	78.45		
3ddyA	186	78.62		
1eu1A	780	79.03	b.52.2.2,c.81.1.1	26903,35311
1fdr	248	80.25		
1sfnA	246	82.83	b.82.1.11	105496
2fxqA	264	83.99		
2jl1A	287	86.11		
2ew0A	192	87.87	d.310.1.1	132445
2w57A	150	88.67		
3hidA	432	89.18