# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3h41A	311	0.004498		
3gt2A	142	0.005101		
2hbwA	235	0.007445		
2evrA	246	0.009188	b.34.11.3,d.3.1.16	132440,132441
2if6A	186	0.1049	d.3.1.21	147651
3ebqA	170	2.044		
3m1uA	434	6.580		
2vobA	652	7.257		
2k3aA	155	11.82		
2io8A	619	15.98	c.30.1.7,d.3.1.15,d.142.1.8	137549,137550,137551
3hbxA	502	16.41		
3eaeA	93	20.01		
1yozA	116	22.59	a.253.1.1	123796
2bw8A	227	26.66	b.29.1.11	129324
1i7pA	274	31.10	b.43.4.2,c.25.1.1	66048,66049
1dz3A	130	36.72	c.23.1.1	31105
3fi7A	183	39.17		
2i61A	62	40.51		
2fg1A	158	42.80	c.50.1.2	133400
3a2zA	197	44.22		
3iccA	255	46.87		
3a2yA	197	50.84		
3ewoA	177	52.03		
1vmeA	410	52.47	c.23.5.1,d.157.1.3	108893,108894
1at0	145	53.03		
1ypxA	375	53.17		
1mzbA	136	53.51	a.4.5.42	91497
1sfnA	246	55.02	b.82.1.11	105496
2ew0A	192	57.14	d.310.1.1	132445
1mb3A	124	58.43	c.23.1.1	78907
2ivfA	976	59.37		
3hidA	432	59.95		
2vt8A	153	62.01		
1sqlA	146	62.37	d.96.1.3	105925
3ievA	308	63.17		
2fxqA	264	65.29		
2napA	723	65.65	b.52.2.2,c.81.1.1	26926,35334
1kskA	234	67.61	d.66.1.5,d.265.1.3	72920,90389
2w57A	150	68.32		
1h3zA	109	68.34	b.34.9.2	83471
1d8cA	723	68.42	c.1.13.1	29325
3dfhA	394	69.85		
1eu1A	780	70.12	b.52.2.2,c.81.1.1	26903,35311
3ejfA	176	74.12		
2h0vA	338	74.40		
1uxy	340	74.53		
2ja9A	175	76.37	b.40.4.5,d.51.1.1	147950,147951
1rjwA	339	76.45	b.35.1.2,c.2.1.1	97582,97583
3ddyA	186	77.05		
3lx5A	272	80.29		
3eeiA	233	83.30		
2p4zA	284	85.04		
1iibA	106	85.05	c.44.2.1	32648
2p1gA	249	85.89		
2jl1A	287	87.04		
1iweA	457	87.42	c.37.1.10	71486
2daqA	110	88.49	b.34.9.2	131354
2a19A	175	88.53