# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3gt2A	142	0.002148		
2hbwA	235	0.003026		
3h41A	311	0.003574		
2evrA	246	0.004619	b.34.11.3,d.3.1.16	132440,132441
2if6A	186	0.1248	d.3.1.21	147651
3ebqA	170	1.711		
2k3aA	155	6.894		
2io8A	619	6.923	c.30.1.7,d.3.1.15,d.142.1.8	137549,137550,137551
1yozA	116	7.330	a.253.1.1	123796
2vobA	652	7.799		
3m1uA	434	8.069		
3hbxA	502	14.99		
2napA	723	17.69	b.52.2.2,c.81.1.1	26926,35334
2bw8A	227	24.67	b.29.1.11	129324
1i7pA	274	24.98	b.43.4.2,c.25.1.1	66048,66049
2ivfA	976	25.06		
1qx4A	274	28.12	b.43.4.2,c.25.1.1	104624,104625
3eaeA	93	34.73		
3ewoA	177	35.29		
1hbq	183	36.33		
2c60A	111	38.00	d.15.2.2	129966
3a2zA	197	40.75		
1eu1A	780	43.65	b.52.2.2,c.81.1.1	26903,35311
1vmeA	410	44.52	c.23.5.1,d.157.1.3	108893,108894
1mzbA	136	44.70	a.4.5.42	91497
2ja9A	175	52.34	b.40.4.5,d.51.1.1	147950,147951
3a2yA	197	55.42		
2i61A	62	56.08		
1at0	145	56.67		
2ptmA	198	59.36		
1u6mA	199	61.72	d.108.1.1	113069
3ddyA	186	65.12		
1uxy	340	65.39		
2a19A	175	65.95		
2w57A	150	67.35		
1rjwA	339	70.68	b.35.1.2,c.2.1.1	97582,97583
2do3A	69	71.32	b.34.5.5	131596
3ggmA	81	71.77		
1h3zA	109	72.63	b.34.9.2	83471
3ejfA	176	73.38		
2jo6A	113	74.75	b.33.1.3	148154
2fk5A	200	75.18		
1mb3A	124	76.79	c.23.1.1	78907
2fg1A	158	77.76	c.50.1.2	133400
2v3vA	723	80.53	b.52.2.2,c.81.1.1	152463,152464
3cbtA	237	82.48		
2cspA	130	83.51	b.1.2.1	130779
3eyyA	145	84.01		
3gr4A	550	84.74		
3g7xA	171	86.35		
3dfhA	394	88.36