# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hbwA 235 0.002166 2evrA 246 0.005038 b.34.11.3,d.3.1.16 132440,132441 3h41A 311 0.01233 3gt2A 142 0.02535 2if6A 186 0.07934 d.3.1.21 147651 2d7uA 339 0.2740 3hbxA 502 0.4197 1pieA 419 0.4581 d.14.1.5,d.58.26.7 94706,94707 1yozA 116 1.182 a.253.1.1 123796 1iweA 457 1.853 c.37.1.10 71486 1hbq 183 1.868 3hidA 432 1.961 3ebqA 170 2.092 1at0A 145 3.967 b.86.1.1 28374 1at0 145 5.085 1w2xA 758 6.281 c.14.1.4,c.14.1.4 109134,109135 2zivA 311 7.119 2io8A 619 7.449 c.30.1.7,d.3.1.15,d.142.1.8 137549,137550,137551 1qf5A 431 8.015 c.37.1.10 32212 1ex0A 731 10.57 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 1vmeA 410 10.91 c.23.5.1,d.157.1.3 108893,108894 1yf2A 425 11.01 d.287.1.2,d.287.1.2 123042,123043 1kskA 234 15.31 d.66.1.5,d.265.1.3 72920,90389 1sg1X 161 17.04 g.24.1.1,g.24.1.1,g.24.1.1,g.24.1.1 105515,105516,105517,105518 2c1xA 456 18.55 c.87.1.10 146225 2op6A 152 20.26 2fk5A 200 21.66 2vobA 652 22.68 1f0iA 504 23.18 d.136.1.2,d.136.1.2 59566,59567 3bq5A 766 23.81 2zu9A 394 24.51 2oqhA 385 25.05 2ivfA 976 25.31 1ji1A 637 25.57 b.1.18.2,b.71.1.1,c.1.8.1 71666,71667,71668 2ew0A 192 28.45 d.310.1.1 132445 2g5fA 450 28.50 d.161.1.1 134654 2napA 723 30.81 b.52.2.2,c.81.1.1 26926,35334 3eaeA 93 31.13 3ktxA 499 31.67 1o7fA 469 31.96 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 2eceA 462 31.97 1w9pA 433 34.21 c.1.8.5,d.26.3.1 114412,114413 3bofA 566 35.76 c.1.21.2,c.1.26.1 155445,155446 1i84S 1184 39.08 i.15.1.1 61940 3gr4A 550 39.28 2bv4A 113 43.74 3md7A 293 44.52 1qydA 313 44.81 c.2.1.2 96583 1thjA 214 45.01 b.81.1.5 28072 1h16A 759 45.65 c.7.1.1 76462 2fg1A 158 46.62 c.50.1.2 133400 1wdeA 294 47.18 c.90.1.1 114534 1vioA 243 47.42 d.265.1.3,d.66.1.5 100762,100763 1t5aA 567 48.76 2wiiA 645 50.34 3e91A 306 52.83 3g7xA 171 53.46 2ef0A 301 55.46 3cbtA 237 55.95 1zunB 434 56.67 b.43.3.1,b.44.1.1,c.37.1.8 125677,125678,125679 1h3zA 109 58.27 b.34.9.2 83471 2ve2A 492 59.36 1sz6A 249 60.43 d.165.1.1 112171 3a2zA 197 60.57 2bw8A 227 60.61 b.29.1.11 129324 2jl1A 287 61.18 2hnhA 910 61.29 1eyqA 222 61.69 d.36.1.1 38534 2qu8A 228 62.97 1m2kA 249 63.85 c.31.1.5 84754 2q09A 416 63.93 b.92.1.10,c.1.9.17 149984,149985 1udxA 416 64.38 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1sjiA 350 64.41 1olzA 663 67.04 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 1u6mA 199 67.42 d.108.1.1 113069 2a19A 175 67.51 2q18X 293 67.73 1dbgA 506 67.79 b.80.1.4 28033 2z61A 370 68.06 3ll3A 504 68.30 1x8gA 227 69.53 d.157.1.1 114960 2ps2A 371 70.03 1ldmA 329 70.71 c.2.1.5,d.162.1.1 30160,42127 2oixA 186 75.08 3i4cA 347 76.20 2vggA 528 77.04 1xa0A 328 77.05 b.35.1.2,c.2.1.1 115021,115022 2i61A 62 77.24 1p3dA 475 77.61 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1h0bA 256 79.70 b.29.1.11 83422 2qvpA 275 80.10 3euaA 329 81.44 1j5xA 342 81.69 c.80.1.1 71591 1np6A 174 82.71 c.37.1.10 85954 2aq9A 262 82.92 b.81.1.1 127167 3eebA 209 82.95 1ydlA 79 82.98 d.295.1.1 123001 2dqaA 124 83.38 2a2cA 478 85.23 2w3zA 311 85.40 2w2dB 431 86.02 3h5iA 140 87.31 3a2yA 197 87.80 1qorA 327 88.11 b.35.1.2,c.2.1.1 24766,29782 2wlzA 548 88.73 1f46A 140 88.98 d.129.4.1 59643