# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3gt2A	142	0.002090		
2hbwA	235	0.003122		
3h41A	311	0.003692		
2evrA	246	0.005070	b.34.11.3,d.3.1.16	132440,132441
2if6A	186	0.06786	d.3.1.21	147651
3ebqA	170	1.116		
3m1uA	434	4.200		
2vobA	652	5.766		
2io8A	619	6.318	c.30.1.7,d.3.1.15,d.142.1.8	137549,137550,137551
2k3aA	155	7.787		
1yozA	116	8.735	a.253.1.1	123796
2bw8A	227	14.94	b.29.1.11	129324
2napA	723	19.18	b.52.2.2,c.81.1.1	26926,35334
3eaeA	93	23.72		
3hbxA	502	24.52		
2ivfA	976	30.86		
3ewoA	177	33.94		
3a2zA	197	38.03		
1hbq	183	39.89		
2ja9A	175	40.45	b.40.4.5,d.51.1.1	147950,147951
1uxy	340	43.06		
1mzbA	136	43.23	a.4.5.42	91497
1h3zA	109	43.83	b.34.9.2	83471
1eu1A	780	48.50	b.52.2.2,c.81.1.1	26903,35311
2c60A	111	49.13	d.15.2.2	129966
3a2yA	197	52.82		
1at0	145	52.82		
1kskA	234	53.20	d.66.1.5,d.265.1.3	72920,90389
2a19A	175	55.62		
3l53A	224	56.20		
1vmeA	410	57.45	c.23.5.1,d.157.1.3	108893,108894
1sfnA	246	62.46	b.82.1.11	105496
3ejfA	176	62.46		
2w57A	150	63.17		
1rjwA	339	64.90	b.35.1.2,c.2.1.1	97582,97583
3eyyA	145	65.12		
2i61A	62	67.42		
3dfhA	394	67.55		
1l7lA	121	68.29	b.18.1.16	77790
1sqlA	146	69.80	d.96.1.3	105925
2daqA	110	72.16	b.34.9.2	131354
1mb3A	124	73.93	c.23.1.1	78907
1dz3A	130	78.59	c.23.1.1	31105
3i96A	119	84.50		
2v3vA	723	88.27	b.52.2.2,c.81.1.1	152463,152464
1at0A	145	89.54	b.86.1.1	28374
3ddyA	186	89.73