# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3gt2A	142	0.006871		
2hbwA	235	0.007361		
3h41A	311	0.008595		
2evrA	246	0.01281	b.34.11.3,d.3.1.16	132440,132441
2if6A	186	0.1124	d.3.1.21	147651
1yozA	116	2.349	a.253.1.1	123796
3ebqA	170	2.921		
3m1uA	434	5.636		
2k3aA	155	13.34		
2vobA	652	13.91		
2io8A	619	16.58	c.30.1.7,d.3.1.15,d.142.1.8	137549,137550,137551
1i7pA	274	27.05	b.43.4.2,c.25.1.1	66048,66049
3hbxA	502	28.09		
2bw8A	227	30.65	b.29.1.11	129324
3eaeA	93	38.34		
1hbq	183	38.44		
2napA	723	41.95	b.52.2.2,c.81.1.1	26926,35334
2c60A	111	42.44	d.15.2.2	129966
1mzbA	136	44.38	a.4.5.42	91497
3ld3A	199	48.06		
2w57A	150	52.38		
1rjwA	339	52.79	b.35.1.2,c.2.1.1	97582,97583
1mb3A	124	56.63	c.23.1.1	78907
1uxy	340	62.66		
1qx4A	274	64.18	b.43.4.2,c.25.1.1	104624,104625
2vt8A	153	64.58		
2i61A	62	65.36		
1ypxA	375	65.82		
3a2zA	197	67.81		
3i96A	119	71.74		
1h3zA	109	71.76	b.34.9.2	83471
2ivfA	976	73.18		
2i6cA	160	75.04	d.108.1.1	137095
3ewoA	177	77.09		
3ddyA	186	79.05		
3iccA	255	81.14		
1l7lA	121	82.16	b.18.1.16	77790
1sfnA	246	83.11	b.82.1.11	105496
3hidA	432	83.62		
2a19A	175	84.75		
1vmeA	410	86.94	c.23.5.1,d.157.1.3	108893,108894
1sqlA	146	88.67	d.96.1.3	105925