# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hbwA	235	0.01562		
3h41A	311	0.01738		
2evrA	246	0.02097	b.34.11.3,d.3.1.16	132440,132441
3gt2A	142	0.02113		
2if6A	186	0.2987	d.3.1.21	147651
3ebqA	170	6.015		
3m1uA	434	7.384		
1yozA	116	11.14	a.253.1.1	123796
2vobA	652	15.01		
2k3aA	155	17.55		
2bw8A	227	22.71	b.29.1.11	129324
3hbxA	502	27.33		
1i7pA	274	31.41	b.43.4.2,c.25.1.1	66048,66049
2io8A	619	32.34	c.30.1.7,d.3.1.15,d.142.1.8	137549,137550,137551
2ivfA	976	43.13		
1mzbA	136	45.68	a.4.5.42	91497
3ewoA	177	47.08		
2w57A	150	51.42		
3eyyA	145	51.72		
1hbq	183	52.62		
3ld3A	199	53.95		
1qx4A	274	54.42	b.43.4.2,c.25.1.1	104624,104625
2napA	723	57.10	b.52.2.2,c.81.1.1	26926,35334
1sfnA	246	58.54	b.82.1.11	105496
1rjwA	339	64.77	b.35.1.2,c.2.1.1	97582,97583
2vt8A	153	70.07		
2ja9A	175	70.65	b.40.4.5,d.51.1.1	147950,147951
1mb3A	124	71.31	c.23.1.1	78907
1eu1A	780	73.29	b.52.2.2,c.81.1.1	26903,35311
2i61A	62	73.51		
2fg1A	158	77.68	c.50.1.2	133400
3l53A	224	77.96		
1vmeA	410	78.51	c.23.5.1,d.157.1.3	108893,108894
3a2zA	197	79.15		
3ievA	308	80.89		
3eaeA	93	81.65		
1mjfA	281	85.55	c.66.1.17	79198
1uxy	340	86.23		
2fe3A	145	88.66