# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3gt2A	142	0.004115		
3h41A	311	0.005277		
2hbwA	235	0.007934		
2evrA	246	0.01390	b.34.11.3,d.3.1.16	132440,132441
2if6A	186	0.01502	d.3.1.21	147651
1rjwA	339	1.507	b.35.1.2,c.2.1.1	97582,97583
3m1uA	434	1.612		
3ebqA	170	3.517		
2vobA	652	3.787		
2io8A	619	11.23	c.30.1.7,d.3.1.15,d.142.1.8	137549,137550,137551
2fg1A	158	28.06	c.50.1.2	133400
1k0wA	231	32.24	c.74.1.1	77220
2fk5A	200	34.59		
1g5tA	196	34.72	c.37.1.11	32366
2k3aA	155	35.19		
1iibA	106	44.03	c.44.2.1	32648
3a2zA	197	55.84		
3a2yA	197	55.98		
1h3zA	109	61.93	b.34.9.2	83471
2ew0A	192	63.69	d.310.1.1	132445
3eaeA	93	68.16		
3llrA	154	70.65		
3dkuA	153	75.43		
2hafA	211	77.91	d.310.1.1	136286
2aj2A	208	77.93	d.310.1.1	126840
1sz9A	144	79.63	a.118.9.4	106139
1v76A	96	80.31	b.137.1.1	113556
1h2bA	359	80.34	b.35.1.2,c.2.1.1	90543,90544
1xgsA	295	82.66	a.4.5.25,d.127.1.1	16216,41153
1n9gA	386	86.62	b.35.1.2,c.2.1.1	91720,91721