# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2if6A	186	0.8398	d.3.1.21	147651
2hbwA	235	1.322		
3h41A	311	2.552		
2evrA	246	3.808	b.34.11.3,d.3.1.16	132440,132441
3fcpA	381	15.78		
3ebqA	170	17.91		
3gd6A	391	21.66		
1vs0A	310	21.69		
1h3zA	109	22.91	b.34.9.2	83471
2og9A	393	24.24		
2oqyA	391	25.44		
1wueA	386	26.06	c.1.11.2,d.54.1.1	114892,114893
2qdeA	397	26.51		
2x18A	119	30.73		
3fq3A	197	31.21		
1at0	145	31.23		
2h7aA	110	32.59	d.350.1.1	147236
3ik4A	365	32.65		
2ovlA	371	33.70		
3dfhA	394	34.36		
2napA	723	36.42	b.52.2.2,c.81.1.1	26926,35334
2pmqA	377	36.68		
1khcA	147	39.12	b.34.9.2	68608
2qjjA	402	39.47		
1pl8A	356	39.49	b.35.1.2,c.2.1.1	94878,94879
2o56A	407	40.22		
3i4kA	383	40.34		
1mdlA	359	42.34	c.1.11.2,d.54.1.1	29247,38891
2cspA	130	44.48	b.1.2.1	130779
1mdl	359	45.36		
1at0A	145	46.32	b.86.1.1	28374
1fhoA	119	46.75	b.55.1.1	26982
2daqA	110	49.13	b.34.9.2	131354
3ii2A	157	50.20		
2dtcA	126	50.55		
2ps2A	371	51.82		
2v3vA	723	51.92	b.52.2.2,c.81.1.1	152463,152464
1a0iA	348	52.30	b.40.4.6,d.142.2.1	25363,41577
3es7A	391	55.71		
2mnr	357	55.86		
1v98A	140	55.98		
1n27A	96	56.79	b.34.9.2	91549
1vj0A	380	59.40	b.35.1.2,c.2.1.1	100786,100787
3g7xA	171	59.79		
2pp3A	398	60.56		
3mwcA	400	61.04		
2pceA	386	61.12		
2hvqA	335	62.13		
2nqlA	388	62.34		
3ileA	157	62.69		
1hjrA	158	63.53	c.55.3.6	33727
1xjaA	178	64.03	b.82.4.1	115382
2ox4A	403	66.48		
1x3sA	195	67.88	c.37.1.8	121670
1zosA	230	69.62		
1mucA	373	73.23	c.1.11.2,d.54.1.1	29236,38880
2fwhA	134	73.68	c.47.1.1	134242
2i5fA	109	74.18	b.55.1.1	147512
2gd9A	189	74.55		
2hb5A	164	75.21		
2vunA	386	75.58		
1kl9A	182	75.92	a.60.14.1,b.40.4.5	111574,111575
3i6tA	381	77.30		
1cr5A	189	78.72	b.52.2.3,d.31.1.1	26931,38465
2qs9A	194	79.67		
3fsyA	332	80.38		
2aj2A	208	80.81	d.310.1.1	126840
3hxsA	141	81.65		
3iam3	783	83.10		
1ihnA	113	83.56	c.103.1.1	62388
2hafA	211	84.12	d.310.1.1	136286
3eizA	196	84.37		
2oq8A	160	84.91		
2dm6A	333	85.21	b.35.1.2,c.2.1.1	131567,131568
2a19A	175	85.37		
3n4eA	393	86.45		
1p90A	145	87.02	c.55.5.2	94377
2pozA	392	87.13		
3fyyA	391	87.36		
1e9gA	286	88.22	b.40.5.1	59393
2f9lA	199	89.08	c.37.1.8	133166
3e4fA	265	89.13		
2pnlA	203	89.88