# List of template models which gave the target the best scores. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Template_ID Template_Length Template_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2evrA 223 8.967e-03 b.34.11.3 132440 d.3.1.16 132441 3gt2A 136 1.536e-02 3h41A 306 3.185e-02 2hbwA 221 4.663e-02 2oc6A 125 2.192e-01 d.198.4.1 148721 3ebqA 145 3.119e-01 1yozA 114 1.360e+00 a.253.1.1 123796 2tbd 135 1.848e+00 2tbd 2if6A 183 1.993e+00 d.3.1.21 147651 1mxsA 217 2.026e+00 c.1.10.1 91494 1wbhA 214 2.103e+00 c.1.10.1 120845 3m1uA 426 2.156e+00 3labA 217 2.305e+00 1rpqW 22 3.039e+00 3c8iA 128 3.699e+00 2yz0A 139 3.731e+00 1vhcA 213 4.026e+00 c.1.10.1 100661 3lr4A 105 4.323e+00 1fwrA 214 4.374e+00 1fwrA c.1.10.1 29164 1mi8A 142 4.405e+00 b.86.1.2 91279 1c01A 77 4.419e+00 1c01A b.11.1.5 23633 1ug8A 88 4.781e+00 d.68.7.1 107825 1euaA 214 5.178e+00 1fwrA c.1.10.1 29155 1ukxA 138 5.372e+00 d.20.1.3 107919 2f4pA 135 5.974e+00 b.82.1.9 132933 1hpwA 130 6.319e+00 1hpwA d.24.1.1 61118 1vlwA 206 6.443e+00 c.1.10.1 108868 3g33B 230 7.091e+00 1wa3A 203 8.616e+00 c.1.10.1 120802 2v82A 206 8.848e+00 2i2jA 22 9.583e+00 1f5qB 248 1.108e+01 1f5qB a.74.1.1 18362 a.74.1.1 18363 3ggmA 76 1.133e+01 1x6zA 120 1.160e+01 d.24.1.1 121763 3hmaA 154 1.193e+01 3e9gA 108 1.226e+01 3mqiA 91 1.231e+01 1v33A 347 1.243e+01 d.264.1.1 100278 1a7iA 61 1.298e+01 g.39.1.3 45143 g.39.1.3 45144 2yw3A 196 1.355e+01 1jmuB 609 1.453e+01 1e32A 439 1.496e+01 1e32A b.52.2.3 59183 c.37.1.20 59184 d.31.1.1 59185 2qxlA 618 1.497e+01 1h2iA 187 1.507e+01 d.50.1.3 76550 3d2fA 630 1.636e+01 3fy4A 523 1.720e+01 2j018 64 1.837e+01 1auk 482 1.929e+01 1auk 1pv9A 338 1.936e+01 c.55.2.1 95157 d.127.1.1 95158 1qfjA 227 1.952e+01 1qfjA b.43.4.2 25655 c.25.1.1 31545 1hj0A 42 1.962e+01 j.86.1.1 65842 1np7A 484 1.964e+01 a.99.1.1 80677 c.28.1.1 80678 2o0qA 115 2.064e+01 d.166.1.7 138867 1ywmA 181 2.141e+01 1dq3A 455 2.249e+01 1dq3A b.86.1.2 28380 d.50.3.1 38798 d.95.2.2 40585 d.95.2.2 40586 1dzoA 121 2.271e+01 1dzoA d.24.1.1 38378 3k7dA 498 2.361e+01 1vs63 65 2.362e+01 1in6A 301 2.364e+01 1hqcA a.4.5.11 62601 c.37.1.20 62602 3bk6A 171 2.444e+01 1ei0A 39 2.505e+01 1hp8 j.77.1.1 46374 2vqrA 513 2.557e+01 1fdrA 245 2.741e+01 b.43.4.2 25653 c.25.1.1 31543 2fdbM 150 2.866e+01 b.42.1.1 145162 1sa1E 135 2.928e+01 a.137.10.1 98786 3csuA 289 2.962e+01 3csuA c.78.1.1 35094 c.78.1.1 35095 1am2 182 2.989e+01 1am2 2hj1A 78 3.152e+01 d.15.3.4 147292 3ed4A 469 3.153e+01 3h7lA 577 3.403e+01 3latA 208 3.501e+01 2wooA 304 3.516e+01 1w98B 271 3.583e+01 a.74.1.1 144548 a.74.1.1 144549 2w8sA 513 3.612e+01 3lgbA 182 3.677e+01 1yb0A 158 3.769e+01 d.118.1.1 122865 2z5iA 50 3.809e+01 3m7nA 180 3.818e+01 3fpkA 248 3.835e+01 3mcrA 155 3.840e+01 2b61A 358 3.958e+01 c.69.1.40 146086 3ctwB 121 3.974e+01