# List of top-scoring protein chains for t2k.100-30-str hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2hbwA 235 4.56e-05 3h41A 311 1.18e-04 2evrA 246 5.61e-04 b.34.11.3 132440 d.3.1.16 132441 1n27A 96 2.30e-02 b.34.9.2 91549 3eaeA 93 5.35e-02 3gt2A 142 7.37e-02 2bh8A 101 8.02e-01 1o54A 277 8.05e-01 c.66.1.13 92482 2p1gA 249 8.78e-01 2im9A 333 1.20e+00 d.3.1.13 137508 2w1kA 252 2.24e+00 1wmmA 145 2.45e+00 b.122.1.8 121049 2z0tA 109 2.74e+00 3gg8A 511 2.90e+00 1jcfA 344 2.93e+00 c.55.1.1 62878 c.55.1.1 62879 2fnjA 226 3.04e+00 b.29.1.22 133818 2a6aA 218 3.26e+00 c.55.1.9 126231 c.55.1.9 126232 3ebqA 170 3.43e+00 2hd9A 145 3.66e+00 b.122.1.8 147268 2ii1A 301 4.44e+00 3fg1A 696 4.49e+00 1u1jA 765 4.78e+00 c.1.22.2 107590 c.1.22.2 107591 3b6nA 187 5.02e+00 2uwaA 274 5.84e+00 2jdcA 146 5.94e+00 d.108.1.1 147977 1kn9A 249 6.49e+00 b.87.1.2 68699 2nn6H 308 6.59e+00 b.40.4.5 148310 b.84.4.2 148311 d.51.1.1 148312 3i99A 357 6.92e+00 1b12A 248 6.97e+00 1b12A b.87.1.2 28388 3a06A 376 7.45e+00 3fg4A 696 7.50e+00 1xdnA 277 7.57e+00 d.142.2.4 115168 2hj1A 97 7.63e+00 d.15.3.4 147292 1o9yA 84 7.88e+00 b.139.1.1 92692 1i2sA 282 8.20e+00 e.3.1.1 71104 2bswA 146 8.25e+00 d.108.1.1 129127 3fg3A 696 8.36e+00 1aqb 183 8.65e+00 1aqb 1y7mA 164 8.80e+00 b.160.1.1 122696 d.7.1.1 122697 1vkyA 347 9.15e+00 e.53.1.1 108696 1tedA 393 9.90e+00 c.95.1.2 106807 1q46A 175 1.02e+01 a.60.14.1 111594 b.40.4.5 111595 1kt6A 183 1.09e+01 b.60.1.1 84466 1stzA 338 1.09e+01 a.4.5.51 106009 d.110.2.3 106010 1h8vA 218 1.10e+01 2nlrA b.29.1.11 60795 2do3A 69 1.13e+01 b.34.5.5 131596 2pr1A 163 1.13e+01 2gu2A 312 1.15e+01 c.56.5.7 147177 2shpA 525 1.17e+01 2shpA c.45.1.2 32683 d.93.1.1 40533 d.93.1.1 40534 1oa2A 218 1.17e+01 b.29.1.11 86721 2ozhA 142 1.23e+01 1cy9A 264 1.23e+01 1ecl e.10.1.1 43236 3gqqA 195 1.25e+01 2q4zA 312 1.27e+01 1i58A 189 1.28e+01 1b3qA d.122.1.3 61773 3ezjA 241 1.29e+01 1f53A 84 1.30e+01 1f53A b.11.1.4 23632 1vqoT 120 1.33e+01 b.34.5.1 120381 1wznA 252 1.34e+01 c.66.1.43 121525 1cf1A 404 1.36e+01 1cf1A b.1.18.11 21907 b.1.18.11 21908 2f7fA 494 1.38e+01 c.1.17.1 133088 d.41.2.1 133089 1jj2S 119 1.39e+01 1ffkQ b.34.5.1 63104 2e27H 126 1.40e+01 3k9uA 159 1.45e+01 1m5q1 130 1.47e+01 1z2lA 423 1.48e+01 c.56.5.4 124383 d.58.19.1 124384 1xbfA 140 1.54e+01 d.273.1.1 109538 3d8cA 349 1.56e+01 1kxoA 184 1.58e+01 b.60.1.1 84475 1pbaA 81 1.59e+01 d.58.3.1 39067 3gxwA 103 1.61e+01 2aouA 292 1.64e+01 c.66.1.19 127100 1yrrA 382 1.66e+01 b.92.1.5 123935 c.1.9.10 123936 2a28A 54 1.67e+01 1f20A 435 1.70e+01 b.43.4.1 64932 c.25.1.4 64933 1xi9A 406 1.70e+01 c.67.1.1 115355 2pbyA 308 1.71e+01 1h2kA 349 1.72e+01 b.82.2.6 76572 3js6A 355 1.73e+01 2hhiA 204 1.75e+01 1jqeA 292 1.81e+01 c.66.1.19 71789 1iv0A 98 1.88e+01 c.55.3.8 90706 3fpcA 352 1.90e+01 2aotA 292 1.90e+01 c.66.1.19 127098 3f0aA 162 1.92e+01 1euvA 221 1.95e+01 1euvA d.3.1.7 37133 3f8tA 506 1.96e+01 2a19A 175 2.00e+01 1vmhA 144 2.09e+01 d.273.1.1 113677 3bzcA 785 2.13e+01 a.60.2.6 155752 a.60.2.6 155753 a.294.1.1 155754 b.40.4.5 155755 c.55.3.13 155756 1j31A 262 2.17e+01 d.160.1.2 90808 1huxA 270 2.18e+01 1huxA c.55.1.5 61278 3jyhA 469 2.19e+01 3hpaA 479 2.20e+01 1qx4A 274 2.21e+01 b.43.4.2 104624 c.25.1.1 104625 1hbq 183 2.26e+01 1aqb 1mzeA 351 2.28e+01 b.82.2.6 79694 1zkdA 387 2.30e+01 c.66.1.52 125184 2xgjA 1010 2.34e+01 1yn8A 59 2.34e+01 1dv5A 80 2.40e+01 1dv5A a.28.1.3 59139 2x58A 727 2.41e+01 1ecl 597 2.50e+01 1ecl 2ozjA 114 2.51e+01 1ffkQ 119 2.51e+01 1ffkQ b.34.5.1 24605 1i7pA 274 2.58e+01 b.43.4.2 66048 c.25.1.1 66049 2k3aA 155 2.58e+01 1pyaB 228 2.59e+01 1pyaB 3lm2A 226 2.62e+01 3adrA 261 2.62e+01 1mw9X 592 2.72e+01 e.10.1.1 91480 1ayrA 368 2.73e+01 1cf1A b.1.18.11 21915 b.1.18.11 21916 3l9aX 88 2.75e+01 2rh0A 157 2.77e+01 1k8kD 300 2.86e+01 d.198.2.1 68309 d.198.2.1 68310 1woqA 267 2.86e+01 c.55.1.10 109462 c.55.1.10 109463 1d2gA 292 2.87e+01 1xvaA c.66.1.5 34187 1tllA 688 2.87e+01 b.43.4.1 107128 c.23.5.2 107129 c.25.1.4 107130 2gmsA 390 2.91e+01 1j53A 186 2.92e+01 c.55.3.5 77076 1ukgA 252 2.98e+01 b.29.1.1 99489 2arcA 164 2.99e+01 2arcA b.82.4.1 28148 1zcjA 463 3.00e+01 3gneA 252 3.02e+01 2q2rA 373 3.04e+01 1ykfA 352 3.11e+01 1pedA b.35.1.2 24757 c.2.1.1 29773 1w44A 331 3.12e+01 c.37.1.11 114147 2ganA 190 3.17e+01 d.108.1.1 134889 3kz5A 52 3.18e+01 3ld7A 101 3.20e+01 1vj0A 380 3.22e+01 b.35.1.2 100786 c.2.1.1 100787 3iusA 286 3.22e+01 2kppA 114 3.23e+01 3gc3A 385 3.24e+01 1wf3A 301 3.31e+01 c.37.1.8 114574 d.52.3.1 114575 2j82A 240 3.37e+01 3kdfA 121 3.39e+01 3exmA 237 3.44e+01 3ie4A 107 3.46e+01 1quqB 121 3.48e+01 1quqB b.40.4.3 25305 2xdvA 442 3.57e+01 2aacA 177 3.59e+01 2arcA b.82.4.1 28150 3b8xA 390 3.61e+01 3cbtA 237 3.63e+01 3mqzA 215 3.72e+01 2v3mA 131 3.75e+01 1cz4A 185 3.76e+01 1cz4A b.52.2.3 26934 d.31.1.1 38468 2wkkA 150 3.82e+01 2ausB 60 3.86e+01 1wz3A 96 3.87e+01 d.15.1.7 121478