# List of top-scoring protein chains for t2k.100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2hbwA 235 1.28e-04 3h41A 311 3.05e-04 2evrA 246 1.42e-03 b.34.11.3 132440 d.3.1.16 132441 3gt2A 142 5.26e-02 1n27A 96 6.52e-02 b.34.9.2 91549 3eaeA 93 2.64e-01 2p1gA 249 6.80e-01 3gg8A 511 1.08e+00 3hbxA 502 1.58e+00 3fg1A 696 1.66e+00 2bh8A 101 2.03e+00 2px2A 269 2.41e+00 2w1kA 252 2.70e+00 1o54A 277 2.98e+00 c.66.1.13 92482 3fg4A 696 3.32e+00 3fg3A 696 3.52e+00 2arcA 164 4.12e+00 2arcA b.82.4.1 28148 1o9yA 84 4.20e+00 b.139.1.1 92692 1u1jA 765 4.47e+00 c.1.22.2 107590 c.1.22.2 107591 1y7mA 164 4.80e+00 b.160.1.1 122696 d.7.1.1 122697 2ii1A 301 4.82e+00 2im9A 333 4.83e+00 d.3.1.13 137508 2aacA 177 5.12e+00 2arcA b.82.4.1 28150 1xdnA 277 5.12e+00 d.142.2.4 115168 3d8cA 349 5.24e+00 2z0tA 109 5.29e+00 1qx4A 274 5.31e+00 b.43.4.2 104624 c.25.1.1 104625 3b6nA 187 5.34e+00 1i7pA 274 5.41e+00 b.43.4.2 66048 c.25.1.1 66049 1w44A 331 5.67e+00 c.37.1.11 114147 2a28A 54 6.40e+00 1yrrA 382 6.63e+00 b.92.1.5 123935 c.1.9.10 123936 1kn9A 249 6.81e+00 b.87.1.2 68699 1xi9A 406 6.83e+00 c.67.1.1 115355 2vhjA 331 6.90e+00 1cz4A 185 6.95e+00 1cz4A b.52.2.3 26934 d.31.1.1 38468 1h2kA 349 7.02e+00 b.82.2.6 76572 1mzeA 351 7.16e+00 b.82.2.6 79694 1yn8A 59 7.21e+00 1b12A 248 7.33e+00 1b12A b.87.1.2 28388 1vpmA 169 7.81e+00 d.38.1.1 113967 1z8kA 193 8.06e+00 b.159.1.1 124703 1m5yA 408 8.06e+00 a.223.1.2 78664 d.26.1.1 78665 d.26.1.1 78666 3ebqA 170 8.08e+00 1umkA 275 8.70e+00 b.43.4.2 113312 c.25.1.1 113313 1xjaA 178 8.71e+00 b.82.4.1 115382 1vqoT 120 9.46e+00 b.34.5.1 120381 1jj2S 119 9.59e+00 1ffkQ b.34.5.1 63104 2shpA 525 9.85e+00 2shpA c.45.1.2 32683 d.93.1.1 40533 d.93.1.1 40534 2do3A 69 9.96e+00 b.34.5.5 131596 2brjA 188 1.04e+01 b.159.1.1 146213 1ffkQ 119 1.05e+01 1ffkQ b.34.5.1 24605 1q46A 175 1.05e+01 a.60.14.1 111594 b.40.4.5 111595 2j9oA 298 1.07e+01 2j7vA 298 1.09e+01 2gu2A 312 1.12e+01 c.56.5.7 147177 1ndh 272 1.14e+01 1ndh 1k8kD 300 1.17e+01 d.198.2.1 68309 d.198.2.1 68310 1ygs 234 1.27e+01 1ygs 1ygsA 234 1.27e+01 b.26.1.1 23907 1yliA 153 1.40e+01 d.38.1.1 123651 1oa2A 218 1.42e+01 b.29.1.11 86721 1f53A 84 1.48e+01 1f53A b.11.1.4 23632 1z85A 234 1.49e+01 2hhiA 204 1.52e+01 2hj1A 97 1.54e+01 d.15.3.4 147292 1yqfA 203 1.57e+01 d.25.1.1 123880 2uvfA 608 1.58e+01 1b9oA 123 1.58e+01 3lzt d.2.1.2 36597 2q4zA 312 1.59e+01 1i2sA 282 1.60e+01 e.3.1.1 71104 1h8vA 218 1.60e+01 2nlrA b.29.1.11 60795 1c4xA 285 1.60e+01 1c4xA c.69.1.10 34684 2a6aA 218 1.70e+01 c.55.1.9 126231 c.55.1.9 126232 1zuyA 58 1.75e+01 2uubD 209 1.75e+01 d.66.1.2 139935 3bjkA 153 1.78e+01 2p41A 305 1.82e+01 c.66.1.25 149193 1vj0A 380 1.84e+01 b.35.1.2 100786 c.2.1.1 100787 1t3qC 288 1.87e+01 d.87.2.1 106371 d.145.1.3 106372 2e27H 126 1.92e+01 2xdvA 442 1.93e+01 2fnjA 226 1.93e+01 b.29.1.22 133818 3g0jA 124 1.99e+01 2e5aA 347 2.03e+01 2wocA 299 2.07e+01 2nn6H 308 2.13e+01 b.40.4.5 148310 b.84.4.2 148311 d.51.1.1 148312 2k3aA 155 2.21e+01 1t61A 229 2.25e+01 d.169.1.6 106529 d.169.1.6 106530 2woeA 299 2.28e+01 2rh0A 157 2.30e+01 2ra8A 362 2.33e+01 3jyhA 469 2.35e+01 1f20A 435 2.39e+01 b.43.4.1 64932 c.25.1.4 64933 1k8kC 372 2.40e+01 b.69.4.1 68308 1oacA 727 2.40e+01 1oacA b.30.2.1 24390 d.17.2.1 38007 d.17.2.1 38008 d.82.1.1 40003 2wjjA 168 2.41e+01 1wmmA 145 2.43e+01 b.122.1.8 121049 1k1zA 78 2.43e+01 b.34.2.1 68026 2xgjA 1010 2.44e+01 2gtqA 867 2.46e+01 1m5q1 130 2.47e+01 1wf3A 301 2.49e+01 c.37.1.8 114574 d.52.3.1 114575 1ub4A 110 2.54e+01 b.34.6.2 88399 1pyaB 228 2.59e+01 1pyaB 2ph0A 174 2.61e+01 1kxoA 184 2.63e+01 b.60.1.1 84475 1vkyA 347 2.68e+01 e.53.1.1 108696 1eu3A 210 2.69e+01 1an8 b.40.2.2 25206 d.15.6.1 37795 3gzxA 457 2.76e+01 2f7fA 494 2.76e+01 c.1.17.1 133088 d.41.2.1 133089 2wjgA 188 2.81e+01 2wjhA 166 2.84e+01 1stzA 338 2.84e+01 a.4.5.51 106009 d.110.2.3 106010 1pzxA 289 2.85e+01 c.119.1.1 95484 1gcqC 70 2.86e+01 1gcpA b.34.2.1 60436 1gh9A 71 2.91e+01 1gh9A g.41.6.1 45266 2cbpA 96 2.95e+01 b.6.1.1 22895 1x82A 190 2.97e+01 b.82.1.7 114955 2gbwA 454 3.01e+01 1fkqA 124 3.02e+01 3lzt d.2.1.2 36601 3mtvA 203 3.03e+01 1q59A 172 3.03e+01 f.1.4.1 95881 1gcpA 70 3.04e+01 1gcpA b.34.2.1 60430 2de0X 526 3.06e+01 2ausB 60 3.07e+01 2uwaA 274 3.07e+01 3gxwA 103 3.08e+01 3gd6A 391 3.11e+01 2nz8B 313 3.23e+01 a.87.1.1 138838 b.55.1.1 138839 3es7A 391 3.40e+01 3i99A 357 3.40e+01 3elfA 349 3.41e+01 1dqsA 393 3.43e+01 1dqsA e.22.1.1 43347 1jcfA 344 3.47e+01 c.55.1.1 62878 c.55.1.1 62879 2vqeD 209 3.47e+01 d.66.1.2 153428 2hd9A 145 3.48e+01 b.122.1.8 147268 3hpaA 479 3.54e+01 1cb0A 283 3.63e+01 1cb0A c.56.2.1 33790 2gjlA 328 3.64e+01 2if6A 186 3.65e+01 d.3.1.21 147651 2oqyA 391 3.67e+01 2pcxA 220 3.69e+01 2v3mA 131 3.70e+01 3fyyA 391 3.73e+01 2a19A 175 3.73e+01 1fxlA 167 3.77e+01 1b7fA d.58.7.1 39183 d.58.7.1 39184 2pr1A 163 3.82e+01 2ozhA 142 3.85e+01 1zlmA 58 3.87e+01 2ffsA 157 3.87e+01 d.129.3.7 133391 2khaA 130 3.89e+01 2f6eA 127 3.91e+01 3c6aA 232 3.92e+01