# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ocyA 198 7.31e-18 d.231.1.1 86817 1h6wA 312 2.51e-06 d.231.1.1,b.108.1.1 83059,83060 1uc7A 125 4.750 c.47.1.1 99163 3hdcA 158 4.796 2oe3A 114 9.922 2wyhA 923 10.38 1fw1A 216 10.66 a.45.1.1,c.47.1.5 60051,60052 2yzuA 109 11.01 2cvkA 110 11.03 2e0qA 104 11.13 2vm1A 118 11.28 1a7iA 81 11.67 g.39.1.3,g.39.1.3 45143,45144 1b21A 110 12.27 d.1.1.2 36219 1rutX 188 12.83 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 3hhvA 110 13.39 1w6kA 732 14.77 a.102.4.2,a.102.4.2 114271,114272 1thxA 115 14.91 c.47.1.1 32732 1fb6A 105 14.91 c.47.1.1 32739 1lkoA 191 15.53 a.25.1.1,g.41.5.1 78063,78064 1ep8A 112 15.59 c.47.1.1 64907 3e3eA 105 15.91 2wz9A 153 16.80 1aw9A 216 17.05 a.45.1.1,c.47.1.5 17736,33030 2v6gA 364 18.53 1nw2A 105 19.23 c.47.1.1 92215 3m0fA 213 20.93 2vimA 104 21.66 1erv 105 22.62 3g23A 274 22.94 3f3qA 109 23.68 3dieA 106 24.69 1m5sA 297 25.05 d.58.33.1,d.58.33.1 74511,74512 2fb2A 340 26.42 2e55A 208 26.96 2yvyA 278 27.03 1thx 115 28.00 2i5nH 258 28.86 b.41.1.1,f.23.10.1 137064,137065 1b2sA 110 29.48 d.1.1.2 36213 3thiA 371 29.94 c.94.1.1 35792 1dbyA 107 30.23 c.47.1.1 32734 1nswA 105 30.50 c.47.1.1 92097 3i65A 415 31.44 3hz4A 140 33.35 1xbsA 149 33.98 1ryt 190 34.04 2ifqA 105 34.20 c.47.1.1 137343 2vqeS 93 34.31 i.1.1.1 153443 2f51A 118 34.59 1aiu 105 34.78 2b0mA 393 35.09 c.1.4.1 127644 1hq8A 123 35.24 d.169.1.1 61127 1erw 105 35.59 3d22A 139 36.03 2rhsB 800 36.35 3gnjA 111 36.35 2iidA 498 36.52 c.3.1.2,d.16.1.5 137426,137427 2afaA 425 36.70 a.102.1.3 126668 1vqqA 646 36.83 d.17.4.5,d.175.1.1,e.3.1.1 114009,114010,114011 3lmiA 307 37.03 3a1pB 93 37.15 1st9A 143 37.86 c.47.1.10 98987 1xg8A 111 37.95 c.47.1.17 115283 2c4bA 143 38.60 d.1.1.2,g.3.2.1 129801,129802 2vluA 122 39.03 2pptA 155 39.12 1b3sA 110 39.14 d.1.1.2 36229 2i1uA 121 39.75 2x0lA 734 39.77 2hivA 621 39.81 1bngA 110 40.48 d.1.1.2 36184 2j23A 121 40.68 3emxA 135 41.07 2kucA 130 41.35 1g47A 77 42.05 g.39.1.3,g.39.1.3 45147,45148 2uubS 93 42.75 d.28.1.1 139950 3iuuA 495 43.06 2wjnH 258 44.20 1banA 110 44.42 d.1.1.2 36197 2iwtA 125 45.89 3lykA 216 46.30 1zu4A 320 48.25 1baoA 110 49.45 d.1.1.2 36187 2trxA 108 50.05 c.47.1.1 32719 1pnsB 234 51.20 i.1.1.1 88169 1b5qA 472 51.55 c.3.1.2,d.16.1.5 30404,37968 2jrfA 184 54.10 2c42A 1231 54.12 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 129790,129791,129792,129793,129794 2jfgA 445 54.77 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 1gh2A 107 55.17 c.47.1.1 60515 3cxgA 133 55.17 1esc 306 55.20 1b2zA 110 60.16 d.1.1.2 36216 3gixA 149 61.25 2dj0A 137 63.10 3c71A 143 63.14 2i4aA 107 63.48 3i8bA 515 64.89 3hxsA 141 65.81 1pls 113 66.77 3d1gA 366 67.93 d.131.1.1,d.131.1.1,d.131.1.1 157200,157201,157202 1eysH 259 68.78 b.41.1.1,f.23.10.1 25484,43517 1fjgB 256 69.80 c.23.15.1 31400 3d6iA 112 73.05 1brhA 110 73.11 d.1.1.2 36151 1fjgS 93 74.62 d.28.1.1 38451 2p5qA 170 74.89 2vocA 112 76.03 1zxiC 288 77.10 d.87.2.1,d.145.1.3 125776,125777 2cfqA 417 78.16 f.38.1.2 130391 2cvbA 188 79.20 c.47.1.10 130859 2wgoA 98 79.67 1egtA 17 81.47 j.45.1.1 46321 1fc3A 120 82.22 a.4.6.3 16237 1mjiA 182 83.45 d.77.1.1 79208 2dtr 226 84.95 2fdbM 164 85.20 b.42.1.1 145162 3lkmA 307 85.38 2i00A 406 85.58 d.106.1.4,d.108.1.10 147466,147467 3n5oA 235 86.86 1rj9A 304 88.89 a.24.13.1,c.37.1.10 97553,97554 1dnpA 471 89.40 a.99.1.1,c.28.1.1 18775,31630 1ydxA 406 89.84 d.287.1.2,d.287.1.2 123004,123005 3lnfA 213 89.90