# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ocyA 198 1.96e-17 d.231.1.1 86817 1h6wA 312 5.51e-06 d.231.1.1,b.108.1.1 83059,83060 3hdcA 158 5.396 1rutX 188 6.411 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 2oe3A 114 7.279 2cvkA 110 8.384 2e0qA 104 8.672 2yzuA 109 9.238 1a7iA 81 10.07 g.39.1.3,g.39.1.3 45143,45144 2vm1A 118 10.10 3hhvA 110 11.49 2wyhA 923 11.99 3e3eA 105 12.38 1thxA 115 12.38 c.47.1.1 32732 1ep8A 112 12.65 c.47.1.1 64907 1fw1A 216 12.71 a.45.1.1,c.47.1.5 60051,60052 3d1gA 366 12.72 d.131.1.1,d.131.1.1,d.131.1.1 157200,157201,157202 1uc7A 125 13.71 c.47.1.1 99163 2e55A 208 14.32 3dieA 106 16.32 1b21A 110 16.84 d.1.1.2 36219 2wz9A 153 16.91 3hz4A 140 17.97 2vimA 104 18.34 1ydxA 406 18.40 d.287.1.2,d.287.1.2 123004,123005 2iidA 498 18.41 c.3.1.2,d.16.1.5 137426,137427 1fb6A 105 19.15 c.47.1.1 32739 1eysH 259 19.20 b.41.1.1,f.23.10.1 25484,43517 1w6kA 732 19.37 a.102.4.2,a.102.4.2 114271,114272 1erv 105 19.50 1thx 115 19.64 3thiA 371 20.54 c.94.1.1 35792 1aiu 105 21.50 1nw2A 105 21.80 c.47.1.1 92215 3f3qA 109 22.22 1erw 105 22.95 3g23A 274 25.59 2cfqA 417 25.73 f.38.1.2 130391 1hq8A 123 26.10 d.169.1.1 61127 1aw9A 216 26.56 a.45.1.1,c.47.1.5 17736,33030 1lkoA 191 26.95 a.25.1.1,g.41.5.1 78063,78064 3lnfA 213 27.54 3m0fA 213 29.41 2fb2A 340 29.60 3gnjA 111 30.05 2ifqA 105 30.33 c.47.1.1 137343 2kdyA 261 31.07 2vluA 122 31.91 2qdrA 303 32.29 2kucA 130 33.02 1qddA 144 33.70 d.169.1.1 42324 1nswA 105 34.05 c.47.1.1 92097 3lmiA 307 34.22 2rhsB 800 34.32 2f51A 118 34.38 2hivA 621 35.32 2j23A 121 36.45 3c22A 156 37.70 1pls 113 39.36 2pptA 155 39.37 2wjnH 258 40.12 2fdbM 164 40.22 b.42.1.1 145162 2iwtA 125 40.38 2i1uA 121 40.91 3d22A 139 41.68 2cvbA 188 42.35 c.47.1.10 130859 2c4bA 143 43.13 d.1.1.2,g.3.2.1 129801,129802 1dbyA 107 43.66 c.47.1.1 32734 1st9A 143 43.78 c.47.1.10 98987 2i5nH 258 44.72 b.41.1.1,f.23.10.1 137064,137065 1fo5A 85 45.15 c.47.1.1 59922 2b0mA 393 45.35 c.1.4.1 127644 3cxgA 133 45.49 2vqeS 93 45.50 i.1.1.1 153443 1zu4A 320 45.88 3c71A 143 45.88 2uubS 93 46.15 d.28.1.1 139950 3lncA 231 46.56 2yvyA 278 46.86 1bngA 110 47.01 d.1.1.2 36184 1j08A 226 47.27 c.47.1.2,c.47.1.2 83855,83856 1b2sA 110 47.64 d.1.1.2 36213 3a1pB 93 48.25 2halA 212 49.08 b.47.1.4 136289 3f1vA 366 49.54 1ryt 190 51.66 1tfr 305 52.18 1g47A 77 52.79 g.39.1.3,g.39.1.3 45147,45148 1gh2A 107 52.98 c.47.1.1 60515 1r26A 125 53.03 c.47.1.1 96847 3i65A 415 53.22 1j6oA 268 53.83 c.1.9.12 77088 2i4aA 107 55.01 1kebA 108 57.37 c.47.1.1 77341 1baoA 110 57.43 d.1.1.2 36187 2i00A 406 57.86 d.106.1.4,d.108.1.10 147466,147467 2gibA 103 58.52 d.254.1.2 135225 2trxA 108 58.99 c.47.1.1 32719 3ewlA 142 59.25 3emxA 135 60.76 1ypqA 135 60.86 d.169.1.1 123833 1banA 110 61.69 d.1.1.2 36197 1w6gA 646 61.97 b.30.2.1,d.17.2.1,d.17.2.1 120660,120661,120662 1m0uA 249 63.73 a.45.1.1,c.47.1.5 78359,78360 1mjiA 182 63.90 d.77.1.1 79208 3k8nA 185 65.67 2w80C 253 65.74 3memA 457 66.10 1pqnA 127 66.10 c.47.1.8 95025 1rj9A 304 66.91 a.24.13.1,c.37.1.10 97553,97554 2x0lA 734 67.15 1a8l 226 69.11 2cx4A 164 69.82 c.47.1.10 130973 3gixA 149 70.67 3hxsA 141 72.54 2rgtA 169 72.68 1jfuA 186 72.87 c.47.1.10 62940 1oacA 727 74.28 b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 3fw2A 150 74.78 1pnsB 234 75.08 i.1.1.1 88169 1itvA 195 75.35 b.66.1.1 76791 1xbsA 149 75.85 1fjgS 93 76.04 d.28.1.1 38451 1m5sA 297 76.43 d.58.33.1,d.58.33.1 74511,74512 2bpdA 142 79.84 1rrjA 565 80.53 a.2.8.1,d.163.1.2,e.15.1.1 105078,105079,105080 2occM 46 80.90 f.23.7.1 43527 3i6yA 280 81.34 3bx4B 146 81.50 3b9jB 350 81.57 d.87.2.1,d.145.1.3 155002,155003 1b3sA 110 82.03 d.1.1.2 36229 1zxiC 288 82.65 d.87.2.1,d.145.1.3 125776,125777 2afaA 425 82.89 a.102.1.3 126668 2dtr 226 82.99 1egtA 17 83.22 j.45.1.1 46321 3g5wA 318 84.86 1b2zA 110 85.45 d.1.1.2 36216 1vqqA 646 86.59 d.17.4.5,d.175.1.1,e.3.1.1 114009,114010,114011 3ld9A 223 86.79 2vocA 112 86.88 2v6gA 364 87.17 1w78A 422 87.87 2xdyA 145 88.33