# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ocyA 198 1.67e-17 d.231.1.1 86817 1h6wA 312 5.78e-06 d.231.1.1,b.108.1.1 83059,83060 3hdcA 158 8.851 2oe3A 114 10.15 1uc7A 125 10.53 c.47.1.1 99163 2cvkA 110 10.57 2vm1A 118 11.03 2e0qA 104 11.04 2yzuA 109 11.29 1b21A 110 11.73 d.1.1.2 36219 3hhvA 110 12.83 2e55A 208 13.39 3e3eA 105 13.66 1thxA 115 13.83 c.47.1.1 32732 1rutX 188 14.35 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 1ep8A 112 14.51 c.47.1.1 64907 1fw1A 216 15.17 a.45.1.1,c.47.1.5 60051,60052 2wz9A 153 15.86 3d1gA 366 15.88 d.131.1.1,d.131.1.1,d.131.1.1 157200,157201,157202 2qdrA 303 16.50 1a7iA 81 17.99 g.39.1.3,g.39.1.3 45143,45144 2wyhA 923 18.12 2vimA 104 19.47 1w6kA 732 19.74 a.102.4.2,a.102.4.2 114271,114272 1erv 105 20.16 2cfqA 417 20.88 f.38.1.2 130391 1thx 115 21.36 1ydxA 406 21.72 d.287.1.2,d.287.1.2 123004,123005 3dieA 106 22.13 3g23A 274 22.73 3f3qA 109 23.22 3hz4A 140 24.50 1fb6A 105 24.57 c.47.1.1 32739 1aiu 105 24.80 1erw 105 25.27 1eysH 259 28.07 b.41.1.1,f.23.10.1 25484,43517 2rhsB 800 28.22 1b2sA 110 28.57 d.1.1.2 36213 3thiA 371 29.94 c.94.1.1 35792 1lkoA 191 30.65 a.25.1.1,g.41.5.1 78063,78064 2vluA 122 30.72 2fb2A 340 31.17 1nw2A 105 31.31 c.47.1.1 92215 1aw9A 216 31.71 a.45.1.1,c.47.1.5 17736,33030 1bngA 110 32.00 d.1.1.2 36184 2halA 212 32.05 b.47.1.4 136289 2iidA 498 32.32 c.3.1.2,d.16.1.5 137426,137427 2f51A 118 32.47 3gnjA 111 32.90 2kucA 130 32.94 2c4bA 143 33.85 d.1.1.2,g.3.2.1 129801,129802 3m0fA 213 34.76 2hivA 621 35.87 2ifqA 105 36.89 c.47.1.1 137343 1baoA 110 39.92 d.1.1.2 36187 2j23A 121 40.31 1nswA 105 40.60 c.47.1.1 92097 1banA 110 41.38 d.1.1.2 36197 3d22A 139 41.66 2wjnH 258 42.09 2pptA 155 43.89 1dbyA 107 44.79 c.47.1.1 32734 2i5nH 258 45.64 b.41.1.1,f.23.10.1 137064,137065 1zu4A 320 45.75 3iuuA 495 45.96 3cxgA 133 46.18 3lnfA 213 47.12 1b3sA 110 47.97 d.1.1.2 36229 2v6gA 364 48.31 1fo5A 85 49.15 c.47.1.1 59922 1j08A 226 50.02 c.47.1.2,c.47.1.2 83855,83856 3emxA 135 51.36 1pls 113 51.40 3lncA 231 51.43 3lmiA 307 51.71 2iwtA 125 52.44 2kdyA 261 53.04 1b2zA 110 53.99 d.1.1.2 36216 1hq8A 123 54.46 d.169.1.1 61127 2jrfA 184 54.87 2dtr 226 57.03 1rj9A 304 58.68 a.24.13.1,c.37.1.10 97553,97554 3f1vA 366 59.98 1m0uA 249 60.43 a.45.1.1,c.47.1.5 78359,78360 2gibA 103 60.48 d.254.1.2 135225 1xbsA 149 60.84 3i65A 415 61.41 2i1uA 121 61.72 1m5sA 297 64.66 d.58.33.1,d.58.33.1 74511,74512 1ryt 190 65.20 3gixA 149 65.78 1gh2A 107 65.86 c.47.1.1 60515 1brhA 110 65.95 d.1.1.2 36151 1kebA 108 68.79 c.47.1.1 77341 1pnsB 234 69.85 i.1.1.1 88169 2x0lA 734 70.33 2i4aA 107 70.73 1g47A 77 71.27 g.39.1.3,g.39.1.3 45147,45148 1itvA 195 71.76 b.66.1.1 76791 2b0mA 393 73.95 c.1.4.1 127644 2yvyA 278 75.60 3lykA 216 76.06 1esc 306 76.17 3memA 457 76.46 1st9A 143 76.91 c.47.1.10 98987 1mjiA 182 77.23 d.77.1.1 79208 2cvbA 188 77.53 c.47.1.10 130859 2jfgA 445 77.77 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 3c22A 156 78.44 1a8l 226 78.45 2p71A 132 78.64 a.39.2.1 139516 3hxsA 141 78.77 2uubS 93 78.88 d.28.1.1 139950 3c71A 143 79.24 2vqeS 93 80.37 i.1.1.1 153443 2i00A 406 80.41 d.106.1.4,d.108.1.10 147466,147467 1pqnA 127 80.43 c.47.1.8 95025 3a1pB 93 81.12 1w78A 422 81.21 1j6oA 268 81.96 c.1.9.12 77088 3idwA 72 83.59 1ash 150 84.07 3ld9A 223 85.80 2occM 46 86.04 f.23.7.1 43527 2trxA 108 87.04 c.47.1.1 32719 3k8nA 185 87.65 1r26A 125 88.62 c.47.1.1 96847