# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ocyA 198 9.60e-13 d.231.1.1 86817 1h6wA 312 0.000708 d.231.1.1,b.108.1.1 83059,83060 1p3dA 475 1.054 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 2eceA 462 1.182 1sjjA 863 3.032 i.15.1.1 98894 3cwwA 990 3.915 3cg8A 343 4.847 1kqfA 1015 5.972 b.52.2.2,c.81.1.1 72871,72872 2halA 212 6.731 b.47.1.4 136289 2fb2A 340 7.850 1k32A 1045 8.824 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2gl6A 392 9.792 2rhsB 800 9.844 2rhqB 795 10.58 2ouxA 286 11.84 a.118.26.1,d.37.1.1 149031,149032 1nw3A 416 12.01 c.66.1.31 86288 3e4aA 1019 12.70 3lplA 886 13.80 1qniA 581 15.52 b.6.1.4,b.69.3.1 23042,27642 1aszB 490 15.89 b.40.4.1,d.104.1.1 25241,40762 1obrA 326 16.82 c.56.5.2 33828 3ksyA 1049 19.00 1t9xA 1049 19.71 3gd0A 367 19.93 3lmiA 307 19.99 3ifeA 434 21.53 2oi2A 292 22.51 1zbpA 273 22.61 e.61.1.1 124861 3gsiA 827 22.90 2w20A 471 23.01 2oqeA 660 23.61 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 3dydA 427 23.97 1fo3A 460 24.09 a.102.2.1 18845 1b0lA 691 24.69 c.94.1.2,c.94.1.2 35847,35848 1jofA 365 24.73 b.69.10.1 71775 3ic8A 310 24.80 1qh4A 380 25.33 a.83.1.1,d.128.1.2 18462,41197 1d8yA 605 25.96 c.55.3.5,e.8.1.1 33684,42977 2avtA 378 26.00 2g09A 297 26.01 2vm1A 118 26.56 1lpqA 564 26.82 a.2.8.1,d.163.1.2,e.15.1.1 74174,74175,74176 2ggoA 401 27.55 1a31A 538 28.21 d.163.1.2,e.15.1.1 42170,43263 2vq7A 461 28.53 1m5sA 297 28.82 d.58.33.1,d.58.33.1 74511,74512 3d1gA 366 28.97 d.131.1.1,d.131.1.1,d.131.1.1 157200,157201,157202 2ipuG 226 29.20 2cx4A 164 29.34 c.47.1.10 130973 2dg1A 333 29.55 b.68.6.1 131493 2iidA 498 29.86 c.3.1.2,d.16.1.5 137426,137427 3hx4A 508 30.19 3i8bA 515 30.55 1pv9A 348 31.80 c.55.2.1,d.127.1.1 95157,95158 2qtcA 886 33.04 c.36.1.6,c.36.1.10,c.48.1.1 151343,151344,151345 3m0fA 213 33.76 3dtbA 624 33.84 3g23A 274 35.11 1z8yA 290 35.14 2r7rA 1095 35.34 2as0A 396 35.81 b.122.1.9,c.66.1.51 127227,127228 1b12A 248 36.98 b.87.1.2 28388 2hivA 621 37.39 3iuuA 495 39.57 2b5eA 504 40.75 c.47.1.2,c.47.1.2,c.47.1.2,c.47.1.2 127888,127889,127890,127891 1kwmA 402 40.91 c.56.5.1,d.58.3.1 73079,73080 1ylhA 560 41.22 3cm8A 471 42.43 2x540 372 43.97 2x531 375 43.99 3lkmA 307 44.69 1zq1C 633 45.67 a.182.1.2,d.74.4.1,d.128.1.5 125493,125494,125495 2glsA 470 46.65 d.15.9.1,d.128.1.1 37851,41181 1lci 550 46.86 3b9jC 763 47.71 d.41.1.1,d.133.1.1 155004,155005 1uc7A 125 48.89 c.47.1.1 99163 3lnfA 213 48.90 3fd2A 373 49.16 2vwkA 773 51.28 c.55.3.5,e.8.1.1 153677,153678 1hm9A 468 51.31 b.81.1.4,c.68.1.5 65866,65867 2aysA 348 52.00 c.94.1.2 127570 3l2eA 374 52.22 3k0aA 519 53.85 2yzuA 109 54.01 3gixA 149 54.12 1ea9C 583 55.40 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 2vluA 122 55.69 1b21A 110 55.71 d.1.1.2 36219 1itvA 195 56.59 b.66.1.1 76791 2oe3A 114 56.66 1seuA 592 56.94 a.2.8.1,d.163.1.2,e.15.1.1 118952,118953,118954 3b9jB 350 57.61 d.87.2.1,d.145.1.3 155002,155003 3k8nA 185 57.67 1ds4A 292 58.72 a.93.1.1 59129 1yc5A 246 61.19 c.31.1.5 122910 1iq4A 179 61.45 d.77.1.1 62641 3mt5A 726 61.82 1fjgB 256 61.92 c.23.15.1 31400 3l8bA 906 64.21 2qdrA 303 64.61 2p0kA 212 64.65 1z5rA 306 65.43 c.56.5.1 124488 2cvkA 110 66.12 2ox0A 381 66.89 2qizA 982 67.68 1erv 105 68.38 2e0qA 104 68.86 2whjA 308 69.36 1v98A 140 70.93 2b0mA 393 72.37 c.1.4.1 127644 2glfA 450 73.55 3hhvA 110 73.91 2im5A 394 74.08 1rutX 188 74.18 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 3hdcA 158 74.60 1dloA 556 74.70 c.55.3.1,e.8.1.2 33584,43040 1ogpA 393 74.86 b.1.18.6,d.176.1.1 92927,92928 1ep8A 112 75.46 c.47.1.1 64907 3fw2A 150 75.46 1jdwA 423 76.33 d.126.1.2 41129 1p80A 753 76.74 c.23.16.3,e.5.1.1 94337,94338 2zxeA 1028 76.85 1eggA 147 79.49 d.169.1.1 42333 1xwl 580 80.49 2clqA 295 81.44 1st9A 143 81.62 c.47.1.10 98987 1b0aA 288 82.28 c.2.1.7,c.58.1.2 30286,33934 3dw8B 447 83.60 1thxA 115 84.20 c.47.1.1 32732 2zblA 421 84.49 1jxmA 301 85.35 b.34.2.1,c.37.1.1 67420,67421 1qwnA 1045 88.36 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 1s3eA 520 88.80 c.3.1.2,d.16.1.5 98426,98427 1jk7A 323 89.84 d.159.1.3 63144