# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ocyA 198 2.89e-17 d.231.1.1 86817 1h6wA 312 5.14e-06 d.231.1.1,b.108.1.1 83059,83060 3hdcA 158 5.050 2cvkA 110 6.122 1rutX 188 6.167 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 1b21A 110 6.222 d.1.1.2 36219 2yzuA 109 6.605 2wyhA 923 7.519 2oe3A 114 7.525 1fb6A 105 7.681 c.47.1.1 32739 2e0qA 104 7.807 3hhvA 110 7.956 1a7iA 81 8.619 g.39.1.3,g.39.1.3 45143,45144 3e3eA 105 8.755 1ep8A 112 9.095 c.47.1.1 64907 1uc7A 125 9.197 c.47.1.1 99163 3iuuA 495 9.916 1fw1A 216 9.931 a.45.1.1,c.47.1.5 60051,60052 1nw2A 105 10.55 c.47.1.1 92215 2vm1A 118 10.64 1erv 105 11.35 1thxA 115 11.51 c.47.1.1 32732 2wz9A 153 12.07 1aw9A 216 12.61 a.45.1.1,c.47.1.5 17736,33030 2e55A 208 12.77 2c4bA 143 13.01 d.1.1.2,g.3.2.1 129801,129802 1b2sA 110 13.62 d.1.1.2 36213 1lkoA 191 14.81 a.25.1.1,g.41.5.1 78063,78064 1baoA 110 14.95 d.1.1.2 36187 1bngA 110 15.05 d.1.1.2 36184 3f3qA 109 15.06 3dieA 106 15.13 2vimA 104 16.77 2ifqA 105 16.83 c.47.1.1 137343 1thx 115 16.90 1hq8A 123 17.41 d.169.1.1 61127 1aiu 105 17.75 1nswA 105 19.00 c.47.1.1 92097 1erw 105 19.10 1banA 110 19.32 d.1.1.2 36197 1b2zA 110 20.84 d.1.1.2 36216 3hz4A 140 20.87 1b3sA 110 20.90 d.1.1.2 36229 2pptA 155 21.33 3gnjA 111 22.71 2cfqA 417 22.87 f.38.1.2 130391 1kebA 108 22.96 c.47.1.1 77341 2f51A 118 23.41 1xbsA 149 23.72 1g47A 77 24.12 g.39.1.3,g.39.1.3 45147,45148 2qdrA 303 24.80 3d22A 139 24.88 2v6gA 364 25.41 1eysH 259 25.43 b.41.1.1,f.23.10.1 25484,43517 1qddA 144 25.59 d.169.1.1 42324 2vluA 122 25.94 2vocA 112 26.16 1dbyA 107 26.53 c.47.1.1 32734 1brhA 110 26.85 d.1.1.2 36151 2j23A 121 26.86 2i1uA 121 26.95 3thiA 371 27.21 c.94.1.1 35792 1ryt 190 27.49 2trxA 108 27.58 c.47.1.1 32719 3g23A 274 27.84 1m0uA 249 29.51 a.45.1.1,c.47.1.5 78359,78360 3i8bA 515 30.00 2fdbM 164 30.98 b.42.1.1 145162 2dtr 226 31.74 3cxgA 133 32.12 3emxA 135 32.79 1w6kA 732 33.70 a.102.4.2,a.102.4.2 114271,114272 1gh2A 107 34.52 c.47.1.1 60515 2i4aA 107 34.55 2rhsB 800 37.76 2iidA 498 39.03 c.3.1.2,d.16.1.5 137426,137427 1pd21 199 40.10 2i5nH 258 42.34 b.41.1.1,f.23.10.1 137064,137065 3c22A 156 43.58 2iwtA 125 43.71 1j08A 226 44.41 c.47.1.2,c.47.1.2 83855,83856 1st9A 143 45.81 c.47.1.10 98987 1m5sA 297 46.96 d.58.33.1,d.58.33.1 74511,74512 1r26A 125 47.62 c.47.1.1 96847 3bx4B 146 47.87 3hxpA 300 48.78 2x0lA 734 49.24 1xg8A 111 50.98 c.47.1.17 115283 2wjnH 258 51.05 2jrfA 184 53.97 1esc 306 54.93 1couA 85 55.12 g.22.1.1 44896 3d1gA 366 55.15 d.131.1.1,d.131.1.1,d.131.1.1 157200,157201,157202 2fb2A 340 55.47 2cx4A 164 55.55 c.47.1.10 130973 1mjiA 182 55.69 d.77.1.1 79208 3d6iA 112 56.25 3hxsA 141 56.72 1ydxA 406 57.74 d.287.1.2,d.287.1.2 123004,123005 2uubS 93 58.90 d.28.1.1 139950 2p5qA 170 60.41 1fgeA 20 60.93 j.45.1.1 46323 1egtA 17 61.06 j.45.1.1 46321 3a1pB 93 62.05 3c71A 143 62.71 1fvuB 125 62.76 d.169.1.1 42346 2afaA 425 64.82 a.102.1.3 126668 2w492 141 65.62 1vqqA 646 67.02 d.17.4.5,d.175.1.1,e.3.1.1 114009,114010,114011 2gibA 103 67.28 d.254.1.2 135225 3gixA 149 67.79 1ash 150 68.04 2wweA 127 68.18 1fo5A 85 68.57 c.47.1.1 59922 1ixxB 123 68.66 d.169.1.1 42336 2hivA 621 69.81 1pls 113 71.80 2vqeS 93 72.08 i.1.1.1 153443 1sw5A 275 73.25 c.94.1.1 106069 3lmiA 307 74.29 1sw5B 275 74.60 c.94.1.1 106070 1ixxA 129 75.22 d.169.1.1 42335 3lykA 216 75.31 3i65A 415 75.39 3lncA 231 76.63 1gouA 116 78.45 d.1.1.2 65429 1rrjA 565 80.26 a.2.8.1,d.163.1.2,e.15.1.1 105078,105079,105080 1zu4A 320 81.48 2rgtA 169 83.07 3m0fA 213 86.17 1fiuA 286 88.12 c.52.1.10 33317 1fjgS 93 89.63 d.28.1.1 38451