# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ocyA 198 2.79e-13 d.231.1.1 86817 1h6wA 312 0.2199 d.231.1.1,b.108.1.1 83059,83060 2yvyA 278 1.924 1uc7A 125 2.706 c.47.1.1 99163 1a36A 592 2.960 a.2.8.1,d.163.1.2,e.15.1.1 15715,42173,43266 1rutX 188 8.116 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 1s3cA 141 10.23 1zx4A 192 10.38 3e53A 480 11.10 2ouxA 286 11.85 a.118.26.1,d.37.1.1 149031,149032 1k4tA 592 12.84 a.2.8.1,d.163.1.2,e.15.1.1 77263,77264,77265 1ois 223 13.90 1oisA 223 15.58 e.15.1.1 43267 1j9bA 141 15.83 c.47.1.12 66459 1fxzA 476 16.10 b.82.1.2,b.82.1.2 65059,65060 1seuA 592 16.35 a.2.8.1,d.163.1.2,e.15.1.1 118952,118953,118954 2dtr 226 19.92 3g5sA 443 20.80 2hivA 621 20.91 1zgkA 308 21.62 b.68.11.1 145998 2gc6A 428 27.48 c.59.1.2,c.72.2.2 134952,134953 1ydnA 295 28.35 1yz1A 174 29.06 b.88.1.2 124264 2fuvA 549 30.52 1j55A 95 30.62 a.39.1.2 77078 3lynA 136 30.67 a.19.1.1 16413 2g5gX 268 30.97 c.150.1.1 147084 2fluX 308 31.50 b.68.11.1 133750 2rjbA 455 31.61 2q7tA 301 33.04 2cw5A 255 33.19 3l4gB 589 33.64 1vk3A 615 33.83 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 1w78A 422 34.96 1fg7A 356 35.50 c.67.1.1 59819 3eifA 936 35.70 1o8xA 146 38.19 c.47.1.10 86681 2gagA 965 38.40 1brwA 433 39.62 a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1piiA 452 39.90 c.1.2.4,c.1.2.4 28559,28563 2iqqA 161 40.89 d.81.2.1 137589 2ef0A 301 41.30 3f0iA 119 42.68 3dydA 427 43.98 1kwfA 363 44.33 a.102.1.2 73078 1lis 136 44.43 1yrcA 414 44.82 a.104.1.1 123917 2lisA 136 45.20 a.19.1.1 16405 1b9bA 255 45.50 c.1.1.1 28531 1qmqA 414 45.52 a.104.1.1 18907 1a31A 538 46.39 d.163.1.2,e.15.1.1 42170,43263 2a74A 643 48.11 1p5dX 463 48.90 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2wpnB 495 49.44 2cw6A 298 51.20 1af0A 471 52.98 b.80.7.1,d.92.1.6 28017,40301 2wn4A 463 54.39 1xx7A 184 54.64 a.211.1.1 116143 1y9iA 178 56.93 a.195.1.1 116586 2hbtA 247 57.66 1rrjA 565 58.11 a.2.8.1,d.163.1.2,e.15.1.1 105078,105079,105080 2ftpA 302 59.71 1r49A 592 62.26 a.2.8.1,d.163.1.2,e.15.1.1 96983,96984,96985 1tuoA 464 64.90 2f7lA 455 65.74 3chvA 284 66.01 2wx6A 388 66.51 1olmA 403 66.57 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 1dz4A 414 66.59 a.104.1.1 18903 1rfzA 168 68.00 a.195.1.1 97411 1k2yX 463 69.06 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 2kfnA 605 69.37 c.55.3.5,e.8.1.1 33682,42975 3fdbA 377 70.34 2cfmA 561 71.09 3bleA 337 71.21 1k7qA 479 71.92 b.80.7.1,d.92.1.6 77283,77284 1gewA 356 72.05 c.67.1.1 60470 2c6cA 707 72.06 a.48.2.1,c.8.4.1,c.56.5.5 129989,129990,129991 2pcqA 283 72.22 1xf1A 926 73.51 2wn6A 463 74.92 3kevA 199 75.44 3fhfA 214 75.93 2pfkA 320 76.11 c.89.1.1 35577 1kgdA 180 78.34 c.37.1.1 68582 1i19A 561 80.37 d.58.32.3,d.145.1.1 61522,61523 2qgvA 140 80.74 3ebmA 180 81.60 3fdhA 499 82.45 2csoA 127 82.67 a.4.5.31 130778 1x2jA 316 82.71 b.68.11.1 121643 3bx4A 136 82.88 3hviA 221 83.93 2r2jA 382 84.15 3kcgI 432 84.73 2ex0A 399 85.32 c.87.1.9 132494 2e2wA 113 85.47 1x19A 359 85.96 1wzzA 334 86.42 a.102.1.2 121536 1zq6A 359 86.79 1tlqA 189 87.47 a.195.1.1 107134 1k7gA 479 87.92 b.80.7.1,d.92.1.6 77279,77280 1wzlA 585 88.79 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 2wsaA 438 89.39 2dsjA 423 89.59