# List of top-scoring protein chains for T0629.t06-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ocyA	198	1.98e-12	d.231.1.1	86817
1pdiA	278	3.81e-12	i.19.1.1	94536
1h6wA	312	0.000133	d.231.1.1,b.108.1.1	83059,83060
2zs0B	142	10.08		
3g7dA	443	13.56		
2i8tA	167	17.04		
2hg0A	408	19.03		
1nx8A	273	19.49	b.82.2.8	86374
2i69A	403	21.26		
3i50E	402	21.46		
2of6A	400	21.87		
2hgsA	474	22.17	c.30.1.4,d.142.1.6	31722,75997
1q9sA	149	22.29	b.43.5.1	96309
1nb9A	147	22.41	b.43.5.1	85515
3cnjA	499	23.28	c.3.1.2,d.16.1.1	156842,156843
3dmgA	381	24.38		
1ryaA	160	25.05	d.113.1.5	105122
1n4wA	504	26.02	c.3.1.2,d.16.1.1	91676,91677
1cboA	504	27.07	c.3.1.2,d.16.1.1	30336,37867
3mi9B	266	28.00		
3gyjA	504	28.14		
1cc2A	504	28.18	c.3.1.2,d.16.1.1	30337,37868
3gyiA	504	28.18		
1b8sA	504	28.87	c.3.1.2,d.16.1.1	30335,37866
2w2hA	264	28.97		
1gff2	177	29.82		
3b6dA	504	31.61	c.3.1.2,d.16.1.1	154882,154883
2gt4A	160	33.92		
3blhB	260	34.10	a.74.1.1,a.74.1.1	155394,155395
1ub6A	208	35.00	b.1.1.1,b.1.1.2	99151,99152
1y18B	226	35.27	b.1.1.1,b.1.1.2	122523,122524
2zulA	375	35.36		
3b3rA	506	35.64	c.3.1.2,d.16.1.1	154815,154816
3ls5H	219	36.01		
1y0lB	226	37.13	b.1.1.1,b.1.1.2	122488,122489
3cfjB	227	37.18	b.1.1.1,b.1.1.2	156567,156568
3c1aA	315	38.18		
1qz9A	416	38.21	c.67.1.3	96621
2rerA	173	40.15	d.129.3.6	151981
2rezA	157	41.61	d.129.3.6	151992
3cfbB	213	44.44		
3cfcH	213	45.65		
2resA	173	45.71	d.129.3.6	151982
3gbnH	226	50.03		
3k99A	232	50.95		
1oqvA	192	52.27	d.24.1.2	87320
3ibtA	264	54.07		
1fl3A	208	58.11	b.1.1.1,b.1.1.2	20486,21450
2fw2A	260	58.16	c.14.1.3	134231
3e4dA	278	61.56		
1igfH	221	66.68	b.1.1.1,b.1.1.2	19813,20923
1ub5A	209	68.57	b.1.1.1,b.1.1.2	99143,99144
1fiuA	286	68.82	c.52.1.10	33317
2xdvA	442	71.65		
3ekoA	226	72.54		
2bh9A	489	73.58		
1mcpH	222	74.47	b.1.1.1,b.1.1.2	19859,20959
3kq5A	393	75.46		
1uz6F	217	77.40	b.1.1.1,b.1.1.2	108152,108153
2wz1A	219	78.71		
3h0gE	210	79.24		
3c2aH	231	83.05	b.1.1.1,b.1.1.2	155872,155873
3ghbH	235	83.98		
1uz8B	212	86.23	b.1.1.1,b.1.1.2	108168,108169
2heyR	146	88.39	g.24.1.1,g.24.1.1,g.24.1.1	136367,136368,136369