# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ocyA 198 6.58e-23 d.231.1.1 86817 3i1cA 324 1.980 1pc6A 146 2.529 d.262.1.1 94430 1al3 324 3.438 1otjA 283 5.480 b.82.2.5 93517 1ne7A 289 5.491 c.124.1.1 91833 1jsxA 207 6.867 c.66.1.20 71846 3bwsA 433 7.226 1al3A 324 7.328 c.94.1.1 35835 3frxA 319 7.428 3ejaA 208 7.638 1w2xA 758 7.952 c.14.1.4,c.14.1.4 109134,109135 1nx8A 273 8.071 b.82.2.8 86374 1i6aA 219 9.007 c.94.1.1 61827 2v3fA 505 10.79 b.71.1.2,c.1.8.3 152453,152454 2wnwA 447 14.74 1brwA 433 15.79 a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 3g23A 274 16.63 2hxrA 238 16.74 3hrpA 409 16.77 3etrB 305 17.04 1uyrA 737 17.96 c.14.1.4,c.14.1.4 100188,100189 3hxjA 330 19.79 2d4yA 463 21.00 2bpqA 373 21.18 1svb 395 22.68 3llpA 493 23.88 2z2nA 299 25.48 3li3A 314 27.51 3fesA 145 27.56 2ppeA 343 28.12 b.6.1.3,b.6.1.3 149769,149770 1tueA 212 28.69 c.37.1.20 107323 3g02A 408 29.61 3hhgA 306 31.67 2gaxA 135 31.69 c.131.1.1 147100 3fimB 566 32.82 1kfuL 699 33.37 a.39.1.8,b.14.1.1,d.3.1.3 68571,68572,68573 3h5qA 436 37.69 3eypA 469 38.02 1v04A 355 38.13 b.68.6.2 100240 1iejA 332 38.14 c.94.1.2 62328 1kdgA 546 38.23 c.3.1.2,d.16.1.1 77337,77338 1o7qA 289 38.75 c.68.1.9 92626 3g2mA 299 39.35 2igbA 179 39.45 c.61.1.1 147655 2fkkA 206 39.47 1lstA 239 41.12 c.94.1.1 35755 1rwiA 270 41.18 b.68.9.1 97987 2ckkA 127 41.84 2ghsA 326 41.91 b.68.6.1 135209 2p1mB 594 41.99 3hhfA 213 43.29 1y7mA 164 43.39 b.160.1.1,d.7.1.1 122696,122697 1lst 239 44.00 2wg4B 457 45.54 2wbpA 358 46.58 3caiA 406 46.65 1z8sA 146 46.70 2qfnA 138 49.70 2f2sA 406 50.74 1w2lA 99 52.02 3bx4B 146 52.32 2z8aA 146 53.03 2wgoA 98 53.34 1q7fA 286 53.89 b.68.9.1 96036 3bc8A 450 54.06 c.67.1.9 155124 1jtdB 273 55.97 b.69.5.2 67265 3k8xA 758 56.12 1ozhA 566 56.37 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1uz8B 212 57.01 b.1.1.1,b.1.1.2 108168,108169 1xcrA 316 57.01 d.290.1.2 121860 2dg1A 333 58.17 b.68.6.1 131493 1yr2A 741 59.77 3hunA 453 59.87 3dr2A 305 59.96 2rqqA 113 62.40 1n62C 288 62.55 d.87.2.1,d.145.1.3 80094,80095 3a4cA 106 62.56 2vx5A 396 63.30 2j0fA 482 63.50 1v8fA 276 64.08 c.26.1.4 100503 1p7tA 731 64.23 c.1.13.1 94319 1p22A 435 64.63 a.158.1.1,b.69.4.1 87715,87716 2e55A 208 64.92 3cssA 267 66.56 1ewfA 456 67.62 d.83.1.1,d.83.1.1 40024,40025 1gskA 513 68.44 b.6.1.3,b.6.1.3,b.6.1.3 83314,83315,83316 2olpA 152 68.89 2whmA 385 69.70 2dkhA 639 70.05 2i33A 258 70.23 3i2cH 222 70.55 2ieaA 886 70.81 c.36.1.6,c.36.1.10,c.48.1.1 137294,137295,137296 2oizA 361 71.07 3hv1A 268 71.51 1tzfA 259 72.71 c.68.1.13 107476 2w60A 218 72.89 3hfqA 347 76.09 3i2nA 357 77.04 1hl9A 449 78.09 b.71.1.3,c.1.8.11 90650,90651 1ixh 321 78.27 3ms5A 388 80.17 2cx6A 90 80.24 c.9.1.1 130981 12e8H 221 81.18 b.1.1.1,b.1.1.2 20269,21269 2ouxA 286 81.29 a.118.26.1,d.37.1.1 149031,149032 1lml 478 81.51 2dsjA 423 82.47 3g7dA 443 83.46 2wvvA 450 84.73 2v44A 189 86.17 1jofA 365 86.27 b.69.10.1 71775 2wdxA 523 87.88 1h54A 754 87.96 a.102.1.4,b.30.5.3 60634,60635 2p8uA 478 88.05 1fiqB 350 88.28 d.87.2.1,d.145.1.3 40229,41760 3dxoA 121 88.62 d.17.4.19 157933 2qtcA 886 88.79 c.36.1.6,c.36.1.10,c.48.1.1 151343,151344,151345