# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ocyA 198 8.02e-25 d.231.1.1 86817 3i1cA 324 2.455 1al3 324 2.693 1otjA 283 2.893 b.82.2.5 93517 3frxA 319 4.403 2wnwA 447 4.990 1pc6A 146 5.408 d.262.1.1 94430 3bwsA 433 6.253 3ejaA 208 6.656 1w2xA 758 7.227 c.14.1.4,c.14.1.4 109134,109135 2v3fA 505 7.312 b.71.1.2,c.1.8.3 152453,152454 1al3A 324 7.674 c.94.1.1 35835 1jsxA 207 8.786 c.66.1.20 71846 1nx8A 273 9.147 b.82.2.8 86374 3etrB 305 9.711 1ne7A 289 11.19 c.124.1.1 91833 3hrpA 409 11.54 2bpqA 373 12.43 1uyrA 737 13.04 c.14.1.4,c.14.1.4 100188,100189 2wbpA 358 15.67 3g02A 408 15.69 2z2nA 299 15.81 1y7mA 164 17.76 b.160.1.1,d.7.1.1 122696,122697 3llpA 493 18.79 3g23A 274 19.22 1brwA 433 19.67 a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 2f2sA 406 19.87 2ghsA 326 20.80 b.68.6.1 135209 1ewfA 456 22.68 d.83.1.1,d.83.1.1 40024,40025 1i6aA 219 25.19 c.94.1.1 61827 1uyjA 296 25.30 f.8.1.2 108143 3bx4B 146 25.33 1q7fA 286 26.94 b.68.9.1 96036 3ms5A 388 28.25 3hxjA 330 29.61 2igbA 179 29.84 c.61.1.1 147655 1h54A 754 30.72 a.102.1.4,b.30.5.3 60634,60635 1svb 395 30.75 2hxrA 238 31.16 3dxoA 121 33.02 d.17.4.19 157933 3k8xA 758 33.64 2p1mB 594 33.95 2e55A 208 34.01 1rwiA 270 34.40 b.68.9.1 97987 3eypA 469 35.20 3g2mA 299 36.05 3caiA 406 36.19 3li3A 314 36.24 1ozhA 566 40.74 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1yr2A 741 41.84 2p8uA 478 41.89 2d4yA 463 42.09 1hkxA 147 42.42 d.17.4.7 83567 1gskA 513 43.32 b.6.1.3,b.6.1.3,b.6.1.3 83314,83315,83316 1kfuL 699 47.30 a.39.1.8,b.14.1.1,d.3.1.3 68571,68572,68573 3fesA 145 47.71 1ixh 321 48.29 1p22A 435 48.86 a.158.1.1,b.69.4.1 87715,87716 3hfqA 347 51.32 1tueA 212 51.59 c.37.1.20 107323 1jofA 365 52.58 b.69.10.1 71775 1fiqB 350 53.29 d.87.2.1,d.145.1.3 40229,41760 1jtdB 273 53.57 b.69.5.2 67265 3hsiA 458 55.15 2wgoA 98 57.17 3h5qA 436 59.12 1o7qA 289 59.13 c.68.1.9 92626 1n62C 288 59.61 d.87.2.1,d.145.1.3 80094,80095 3h3hA 122 60.20 3frkA 373 60.64 1xcrA 316 60.86 d.290.1.2 121860 2oizA 361 61.32 2p4oA 306 61.61 b.68.6.3 149216 2wg4B 457 61.92 1sctB 151 62.25 a.1.1.2 15003 2ckkA 127 64.46 1uz8B 212 65.76 b.1.1.1,b.1.1.2 108168,108169 2qfnA 138 66.34 1iejA 332 66.63 c.94.1.2 62328 1h30A 422 67.47 b.29.1.4,b.29.1.4 76604,76605 2ppeA 343 67.60 b.6.1.3,b.6.1.3 149769,149770 2hu5A 582 68.10 b.69.7.2,c.69.1.33 136763,136764 1v8fA 276 69.18 c.26.1.4 100503 12e8H 221 69.19 b.1.1.1,b.1.1.2 20269,21269 2wdxA 523 69.46 3fw6A 534 71.59 2fkkA 206 71.95 3c75H 426 72.07 1jwiA 131 72.28 d.169.1.1 67383 3i2cH 222 72.44 3f7mA 279 72.80 1nexB 464 74.22 a.158.1.1,b.69.4.1 80443,80444 2olpA 152 74.49 1v04A 355 75.18 b.68.6.2 100240 1o89A 345 75.62 b.35.1.2,c.2.1.1 92644,92645 2q0xA 335 76.97 3ho6A 267 77.11 1kdgA 546 77.42 c.3.1.2,d.16.1.1 77337,77338 3dweX 279 77.52 2c71A 216 77.97 c.6.2.3 130017 1abvA 134 78.77 a.70.1.1 18317 1qo7A 394 79.02 c.69.1.11 34697 1z8sA 146 79.96 2cx6A 90 80.02 c.9.1.1 130981 1itvA 195 80.21 b.66.1.1 76791 3fimB 566 81.00 3dpcA 455 81.74 3bzbA 281 81.91 2dg1A 333 82.52 b.68.6.1 131493 2z8aA 146 82.78 3cssA 267 83.59 2pxxA 215 83.96 1p7tA 731 84.09 c.1.13.1 94319 2obtA 327 84.22 3ei4B 436 85.03 2gaxA 135 85.56 c.131.1.1 147100 3dr2A 305 85.90 2vsmA 416 85.90 2ifqA 105 87.39 c.47.1.1 137343 1tzfA 259 87.61 c.68.1.13 107476 3hhgA 306 88.03 3f7xA 151 88.47