# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ocyA 198 2.13e-16 d.231.1.1 86817 3k1qC 1196 2.825 1fepA 724 4.709 f.4.3.3 43808 1kqfA 1015 8.110 b.52.2.2,c.81.1.1 72871,72872 2wadA 680 8.983 1xdpA 687 9.895 a.7.15.1,d.322.1.2,d.136.1.4,d.136.1.4 121896,121897,121898,121899 1ho8A 480 11.44 a.118.1.9 61107 1a0rB 340 12.40 b.69.4.1 27658 2d4yA 463 12.75 3e4zA 990 14.88 1y4wA 518 15.16 b.29.1.19,b.67.2.3 116470,116471 1wb9A 800 16.40 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 120833,120834,120835,120836 1xcrA 316 17.16 d.290.1.2 121860 1q7fA 286 17.24 b.68.9.1 96036 3edyA 544 17.40 1ia6A 441 19.28 a.102.1.2 76738 1fs5A 266 20.08 c.124.1.1 65044 3hfqA 347 20.35 1brwA 433 21.36 a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 2wnwA 447 21.78 1ne7A 289 22.13 c.124.1.1 91833 2igqA 285 22.15 2ieaA 886 23.65 c.36.1.6,c.36.1.10,c.48.1.1 137294,137295,137296 2qomA 285 24.75 1n67A 359 24.78 b.2.3.4,b.2.3.4 85354,85355 1al3 324 25.58 2axtC 473 29.99 f.55.1.1 144928 3gjwA 350 30.06 1ldjA 760 32.07 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 1hkxA 147 33.56 d.17.4.7 83567 1pc6A 146 33.89 d.262.1.1 94430 1lnsA 763 34.54 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 3dw8B 447 35.42 3dtbA 624 36.54 1qksA 567 36.61 a.3.1.2,b.70.2.1 15951,27710 1i6aA 219 37.38 c.94.1.1 61827 3ho6A 267 37.91 2qf2A 624 39.39 3gsiA 827 39.71 2rhsB 800 40.18 1svb 395 40.25 3e7fA 265 40.41 3i1cA 324 40.74 4ubpC 570 41.37 b.92.1.1,c.1.9.2 28431,29053 2vwkA 773 41.46 c.55.3.5,e.8.1.1 153677,153678 1kfuL 699 41.70 a.39.1.8,b.14.1.1,d.3.1.3 68571,68572,68573 3sil 379 41.70 1qxpA 900 42.13 a.39.1.8,a.39.1.8,b.14.1.1,d.3.1.3 96543,96544,96545,96546 2j04B 524 50.40 3hsuA 503 51.26 1zbpA 273 51.71 e.61.1.1 124861 3h2yA 368 52.22 3mmyA 368 53.96 3ktxA 499 54.44 1al3A 324 54.51 c.94.1.1 35835 2bpqA 373 54.80 1jtdB 273 57.18 b.69.5.2 67265 2okcA 445 57.90 c.66.1.45 148801 1wakA 397 58.58 2ovrB 445 58.67 a.158.1.1,b.69.4.1 145735,145736 1hv9A 456 59.32 b.81.1.4,c.68.1.5 28060,34518 3l07A 285 59.49 1b0aA 288 60.12 c.2.1.7,c.58.1.2 30286,33934 3kd4A 506 61.41 2hxrA 238 62.47 3cyvA 354 62.82 3h5qA 436 63.12 1khbA 625 63.45 c.91.1.1,c.109.1.1 68606,68607 1jsxA 207 63.60 c.66.1.20 71846 1alvA 173 65.10 a.39.1.8 17370 2aq4A 434 65.16 2c2xA 281 66.87 1epwA 1290 67.19 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1nx8A 273 67.22 b.82.2.8 86374 3a7cA 580 67.32 3eb9A 266 68.84 1ldkA 396 69.32 a.118.17.1 73851 2f1cX 286 69.62 3ik2A 517 70.18 2x540 372 72.04 1hm9A 468 72.22 b.81.1.4,c.68.1.5 65866,65867 3bwsA 433 73.24 2x531 375 73.41 1cruA 454 74.39 b.68.2.1 27617 3kyaA 496 75.54 1th0A 226 76.79 d.3.1.7 106903 3k1qA 1299 77.59 2e55A 208 77.63 3ec3A 250 77.78 3llpA 493 79.66 2opwA 291 80.20 2cfmA 561 80.65 1t5aA 567 81.92 3c4hA 357 83.94 1ntyA 311 84.10 a.87.1.1,b.55.1.1 103873,103874 3jv9A 219 84.55 2igbA 179 85.96 c.61.1.1 147655 2bibA 547 86.72 b.109.1.1,d.157.1.8 128581,128582 2im5A 394 87.47 1mt6A 280 88.57 b.76.2.1,b.85.7.1 79446,79447