# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ocyA	198	5.64e-23	d.231.1.1	86817
3i1cA	324	2.198		
3frxA	319	2.518		
1al3	324	2.519		
1ne7A	289	2.840	c.124.1.1	91833
2v3fA	505	3.891	b.71.1.2,c.1.8.3	152453,152454
1pc6A	146	5.256	d.262.1.1	94430
3hrpA	409	6.158		
3bwsA	433	6.399		
1otjA	283	6.540	b.82.2.5	93517
1al3A	324	6.787	c.94.1.1	35835
1nx8A	273	6.939	b.82.2.8	86374
2z2nA	299	9.487		
1h54A	754	10.44	a.102.1.4,b.30.5.3	60634,60635
1w2xA	758	10.77	c.14.1.4,c.14.1.4	109134,109135
2wnwA	447	12.94		
1h30A	422	13.24	b.29.1.4,b.29.1.4	76604,76605
1jsxA	207	14.63	c.66.1.20	71846
3etrB	305	14.84		
3g23A	274	17.07		
3llpA	493	17.28		
1i6aA	219	18.10	c.94.1.1	61827
1ewfA	456	18.22	d.83.1.1,d.83.1.1	40024,40025
2bpqA	373	18.53		
2ghsA	326	19.17	b.68.6.1	135209
2hxrA	238	20.10		
3g02A	408	20.77		
2qtcA	886	22.38	c.36.1.6,c.36.1.10,c.48.1.1	151343,151344,151345
1gskA	513	22.74	b.6.1.3,b.6.1.3,b.6.1.3	83314,83315,83316
1xcrA	316	23.74	d.290.1.2	121860
3hxjA	330	24.10		
1rwiA	270	24.71	b.68.9.1	97987
3ejaA	208	25.30		
1q7fA	286	25.85	b.68.9.1	96036
2igbA	179	27.37	c.61.1.1	147655
1svb	395	28.62		
1uyrA	737	28.74	c.14.1.4,c.14.1.4	100188,100189
1ozhA	566	30.60	c.31.1.3,c.36.1.5,c.36.1.9	93833,93834,93835
1hkxA	147	30.64	d.17.4.7	83567
3bx4B	146	30.87		
1uyjA	296	30.91	f.8.1.2	108143
3fimB	566	31.19		
2p4oA	306	31.76	b.68.6.3	149216
1y7mA	164	35.18	b.160.1.1,d.7.1.1	122696,122697
2d4yA	463	35.29		
1v04A	355	35.42	b.68.6.2	100240
2oizA	361	35.54		
2f2sA	406	35.68		
2p1mB	594	36.36		
3hfqA	347	37.87		
1yr2A	741	38.07		
2ieaA	886	38.42	c.36.1.6,c.36.1.10,c.48.1.1	137294,137295,137296
3li3A	314	39.92		
2hu5A	582	40.88	b.69.7.2,c.69.1.33	136763,136764
1l8aA	886	42.81	c.36.1.10,c.36.1.6,c.48.1.1	73677,73678,73679
1p22A	435	43.11	a.158.1.1,b.69.4.1	87715,87716
2bjqA	345	44.16	b.169.1.1,b.169.1.1	128626,128627
3fesA	145	44.85		
1kfuL	699	45.98	a.39.1.8,b.14.1.1,d.3.1.3	68571,68572,68573
2wbpA	358	46.26		
2e55A	208	48.36		
3f7mA	279	49.05		
3hsiA	458	49.62		
2dkhA	639	50.00		
2wg4B	457	51.09		
2wgoA	98	53.11		
3c75H	426	53.72		
1w2lA	99	54.56		
3dr2A	305	55.22		
3g2mA	299	55.73		
2ppeA	343	56.72	b.6.1.3,b.6.1.3	149769,149770
2p8uA	478	56.83		
1n62C	288	58.03	d.87.2.1,d.145.1.3	80094,80095
3h5qA	436	59.96		
1nexB	464	60.13	a.158.1.1,b.69.4.1	80443,80444
3eypA	469	60.46		
2igqA	285	61.17		
3cssA	267	61.84		
1brwA	433	62.55	a.46.2.1,c.27.1.1,d.41.3.1	17764,31628,38626
3e7fA	265	64.31		
1tzfA	259	67.16	c.68.1.13	107476
3ms5A	388	68.73		
3eb9A	266	68.83		
1itvA	195	69.92	b.66.1.1	76791
2pywA	420	70.36		
1tueA	212	70.60	c.37.1.20	107323
3g7dA	443	71.35		
2dg1A	333	71.39	b.68.6.1	131493
1v8fA	276	71.97	c.26.1.4	100503
1fiqB	350	73.16	d.87.2.1,d.145.1.3	40229,41760
1jtdB	273	74.20	b.69.5.2	67265
1z8sA	146	76.15		
3dxoA	121	76.42	d.17.4.19	157933
3h0bA	405	77.42		
3i2cH	222	80.91		
2cx6A	90	83.48	c.9.1.1	130981
1a3cA	181	84.19	c.61.1.1	34095
2w60A	218	84.30		
2vsmA	416	84.97		
1qo7A	394	86.17	c.69.1.11	34697
1jofA	365	87.27	b.69.10.1	71775
1dykA	394	87.75	b.29.1.4,b.29.1.4	24223,24224
3hhfA	213	88.91		
1a0rB	340	89.00	b.69.4.1	27658
1o7qA	289	89.21	c.68.1.9	92626