# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ocyA 198 2.09e-24 d.231.1.1 86817 1al3 324 2.153 2wnwA 447 2.595 3i1cA 324 2.595 3frxA 319 3.483 1ne7A 289 3.877 c.124.1.1 91833 1otjA 283 3.888 b.82.2.5 93517 1jsxA 207 5.041 c.66.1.20 71846 1nx8A 273 5.267 b.82.2.8 86374 1pc6A 146 5.443 d.262.1.1 94430 1al3A 324 6.054 c.94.1.1 35835 3bwsA 433 8.744 3hrpA 409 9.652 2v3fA 505 11.45 b.71.1.2,c.1.8.3 152453,152454 2bpqA 373 11.50 1w2xA 758 14.51 c.14.1.4,c.14.1.4 109134,109135 3ejaA 208 18.07 1uyjA 296 18.31 f.8.1.2 108143 3etrB 305 20.71 1h54A 754 21.14 a.102.1.4,b.30.5.3 60634,60635 3g23A 274 22.73 1brwA 433 22.82 a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 2z2nA 299 23.58 2hxrA 238 23.92 3g2mA 299 24.49 2d4yA 463 25.57 1i6aA 219 26.75 c.94.1.1 61827 3fesA 145 29.06 3h5qA 436 30.76 1xcrA 316 33.57 d.290.1.2 121860 1kdgA 546 34.14 c.3.1.2,d.16.1.1 77337,77338 1ewfA 456 34.43 d.83.1.1,d.83.1.1 40024,40025 1uyrA 737 35.31 c.14.1.4,c.14.1.4 100188,100189 3li3A 314 35.49 1y7mA 164 35.84 b.160.1.1,d.7.1.1 122696,122697 1ozhA 566 36.20 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 3llpA 493 36.57 3fimB 566 36.74 3eypA 469 37.10 2p1mB 594 37.19 1p22A 435 38.55 a.158.1.1,b.69.4.1 87715,87716 2ghsA 326 39.05 b.68.6.1 135209 2f2sA 406 39.30 1hkxA 147 39.79 d.17.4.7 83567 3ms5A 388 42.21 3bx4B 146 43.34 3dxoA 121 43.95 d.17.4.19 157933 2igbA 179 44.47 c.61.1.1 147655 3fw6A 534 44.94 2wbpA 358 46.23 1ixh 321 46.25 1svb 395 47.65 3hhgA 306 50.55 1h30A 422 51.90 b.29.1.4,b.29.1.4 76604,76605 1z8sA 146 52.29 2wvgA 568 52.40 3dr2A 305 52.54 3hfqA 347 53.50 1kfuL 699 54.22 a.39.1.8,b.14.1.1,d.3.1.3 68571,68572,68573 3e7fA 265 54.61 2v44A 189 55.07 3eb9A 266 57.74 1gskA 513 59.08 b.6.1.3,b.6.1.3,b.6.1.3 83314,83315,83316 1rwiA 270 59.14 b.68.9.1 97987 1nexB 464 60.03 a.158.1.1,b.69.4.1 80443,80444 2gaxA 135 60.65 c.131.1.1 147100 2wgoA 98 61.04 3frkA 373 61.83 3caiA 406 62.39 3g02A 408 62.66 2wg4B 457 63.29 1v04A 355 64.60 b.68.6.2 100240 2obtA 327 64.60 1o7qA 289 64.71 c.68.1.9 92626 2qtcA 886 66.20 c.36.1.6,c.36.1.10,c.48.1.1 151343,151344,151345 2yskA 145 68.80 3cssA 267 69.81 2rqqA 113 70.37 1n62C 288 71.71 d.87.2.1,d.145.1.3 80094,80095 3a4cA 106 71.84 2qfnA 138 72.51 3i2cH 222 75.29 2i33A 258 75.81 2cx6A 90 76.83 c.9.1.1 130981 2w60A 218 78.37 2p8uA 478 78.41 1uz8B 212 80.76 b.1.1.1,b.1.1.2 108168,108169 2e55A 208 80.89 12e8H 221 81.07 b.1.1.1,b.1.1.2 20269,21269 3hxjA 330 81.27 1jr7A 311 81.58 b.82.2.3 63255 3tdt 274 81.77 2ieaA 886 81.99 c.36.1.6,c.36.1.10,c.48.1.1 137294,137295,137296 3do6A 543 82.63 1yr2A 741 82.67 2vsmA 416 85.63 1w2lA 99 85.82 3c75H 426 86.71 1lst 239 88.33 1hl9A 449 89.08 b.71.1.3,c.1.8.11 90650,90651