# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ocyA 198 1.66e-24 d.231.1.1 86817 1al3 324 2.464 1jsxA 207 2.531 c.66.1.20 71846 1pc6A 146 2.555 d.262.1.1 94430 3frxA 319 2.733 1otjA 283 3.607 b.82.2.5 93517 1ne7A 289 4.304 c.124.1.1 91833 1nx8A 273 5.135 b.82.2.8 86374 2wnwA 447 5.391 3i1cA 324 6.071 1al3A 324 6.648 c.94.1.1 35835 1brwA 433 10.32 a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 3g23A 274 10.74 1w2xA 758 11.50 c.14.1.4,c.14.1.4 109134,109135 3fimB 566 12.21 2z2nA 299 12.94 1uyrA 737 14.30 c.14.1.4,c.14.1.4 100188,100189 2bpqA 373 14.55 2v3fA 505 15.53 b.71.1.2,c.1.8.3 152453,152454 3bwsA 433 15.72 3hxjA 330 15.72 3hrpA 409 15.76 3dr2A 305 15.96 1hkxA 147 16.51 d.17.4.7 83567 3etrB 305 19.58 3llpA 493 20.24 2f2sA 406 24.01 1ixh 321 24.46 1y7mA 164 24.78 b.160.1.1,d.7.1.1 122696,122697 1xcrA 316 24.82 d.290.1.2 121860 3h5qA 436 26.03 1ozhA 566 27.08 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1h30A 422 28.04 b.29.1.4,b.29.1.4 76604,76605 3fesA 145 28.84 3caiA 406 32.12 2wvgA 568 32.93 3k8xA 758 34.37 3g2mA 299 34.89 3li3A 314 34.91 3h0bA 405 36.86 1v04A 355 37.04 b.68.6.2 100240 1ewfA 456 37.04 d.83.1.1,d.83.1.1 40024,40025 3do6A 543 39.35 3bx4B 146 39.47 1q7fA 286 39.84 b.68.9.1 96036 2igbA 179 40.15 c.61.1.1 147655 2p1mB 594 40.86 1tzfA 259 41.38 c.68.1.13 107476 2ghsA 326 42.35 b.68.6.1 135209 3a4cA 106 42.99 2w60A 218 43.16 1n62C 288 43.27 d.87.2.1,d.145.1.3 80094,80095 3dxoA 121 43.61 d.17.4.19 157933 1svb 395 45.97 3f7mA 279 46.41 3g02A 408 46.82 1kdgA 546 47.65 c.3.1.2,d.16.1.1 77337,77338 2wg4B 457 48.93 1w2lA 99 49.13 3f7xA 151 49.24 2vocA 112 50.10 2qfnA 138 50.59 1z8sA 146 51.28 2hxrA 238 51.34 2p8uA 478 53.04 1lstA 239 53.32 c.94.1.1 35755 1o7qA 289 53.57 c.68.1.9 92626 3eypA 469 54.34 1lst 239 55.07 2gaxA 135 55.63 c.131.1.1 147100 1w50A 411 56.30 b.50.1.2 109173 1uyjA 296 56.43 f.8.1.2 108143 3dweX 279 58.01 2fkkA 206 59.69 2yskA 145 59.88 1ok8A 394 60.84 b.1.18.4,f.10.1.1 93236,93237 1v8fA 276 61.44 c.26.1.4 100503 2d4yA 463 63.17 2ez9A 603 63.64 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 3g7dA 443 63.74 1lml 478 65.35 1rwiA 270 65.64 b.68.9.1 97987 1i6aA 219 68.59 c.94.1.1 61827 3ho6A 267 68.92 12e8H 221 69.16 b.1.1.1,b.1.1.2 20269,21269 1uz8B 212 70.05 b.1.1.1,b.1.1.2 108168,108169 2e55A 208 72.95 3i2cH 222 73.02 2rqqA 113 73.15 1kcvH 217 74.63 b.1.1.1,b.1.1.2 72315,72316 2olpA 152 76.14 2cx6A 90 76.19 c.9.1.1 130981 2wdxA 523 76.42 2wbpA 358 77.68 2i33A 258 78.02 2oajA 902 78.17 3ejaA 208 78.27 1fiqB 350 78.51 d.87.2.1,d.145.1.3 40229,41760 3ms5A 388 79.56 1xpmA 396 79.99 c.95.1.2,c.95.1.2 115759,115760 2p4oA 306 81.29 b.68.6.3 149216 1h54A 754 81.79 a.102.1.4,b.30.5.3 60634,60635 1t3wA 148 81.89 a.236.1.1 112233 1l0qA 391 82.91 b.1.3.1,b.69.2.3 77644,77645 1jofA 365 84.63 b.69.10.1 71775 2i1uA 121 85.43 3h3hA 122 86.04 2boyA 254 87.75 3kklA 244 88.70